biopython

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

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Repository: davila7/claude-code-templates
Last source activity: December 20, 2025 at 21:13
Detected SKILL.md language: English
Stars: 33,360
Forks: 3,917

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Follow https://skillsmp.com/skill-install/prompt.md to install only the Agent Skill at https://github.com/davila7/claude-code-templates/tree/main/cli-tool/components/skills/scientific/biopython.

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name	biopython
description	Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.

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senior-frontend

You MUST use this whenever you build, change or review user interface code, including small UI tweaks and when the user is in a hurry: pages, components, forms, lists, tables, modals, navigation, layout or styling in React, Next.js, Vue, Svelte, Astro or plain HTML/CSS/Tailwind. Reuse the project's own components and tokens, design every state (loading, empty, error, long content), make it work with a keyboard and a screen reader and at phone width, then open it in a real browser and check it before saying it is done.

2026-11-11

render-deploy

Deploy applications to Render by analyzing codebases, generating render.yaml Blueprints, and providing Dashboard deeplinks. Use when the user wants to deploy, host, publish, or set up their application on Render's cloud platform.

2026-11-08

technical-debt-auditor

Scans a codebase and produces a quantified technical debt report with a prioritized remediation plan. Analyzes dead code, TODO/FIXME/HACK markers, dependency staleness, complexity hotspots, code duplication signals, test coverage gaps, unused exports, and outdated patterns. Use this skill when the user asks to audit their codebase for tech debt, wants a health check of their code quality, says things like "where should I focus refactoring", "find code smells", "audit my codebase", "what technical debt do we have", "prioritize cleanup work", or asks about code quality metrics. Also trigger when the user mentions "code rot", "legacy cleanup", "refactoring priorities", or wants to understand the overall health of a project before a major effort. Trigger even if the user doesn't say "technical debt" explicitly — any request to systematically assess code quality and identify improvement priorities belongs here.

2026-11-08

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biopython

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