cx-foldseek-structural-search

Find structurally similar proteins by submitting a 3D coordinate file (.pdb, .cif, or .mmcif) to the Foldseek web API and search databases such as PDB, AlphaFold, CATH, and MGnify. Use ONLY when the user provides a physical structure file and wants structural homologs. Public data, no credential needed.

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Repository: eightmm/codex-science
Last source activity: July 10, 2026 at 05:36
Detected SKILL.md language: English
Stars: 2
Forks: 0

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SKILL.md

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quantitative-research

Execute auditable quantitative research across preregistered study design, statistical inference, numerical verification, dimensional analysis, uncertainty propagation, counterexample search, and formal proof. Use when a scientific or mathematical question needs actual computation and machine-readable evidence rather than only explanation.

2026-08-04

statistical-decision-analysis

Compare finite actions under uncertainty with explicit states, loss, utility or risk-neutral payoff, priors, experiment likelihoods, and a declared decision criterion. Use for Bayes risk, expected utility or payoff, pure-action minimax, minimax regret, dominance, posterior decision policies, EVPI/EVSI, experiment-cost decisions, and prior-threshold sensitivity; do not use for ordinary statistical testing, causal identification, strategic games, or MDP/POMDP/RL planning.

2026-08-04

cx-statistical-decision-analysis

2026-08-04

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name	cx-foldseek-structural-search
description	Find structurally similar proteins by submitting a 3D coordinate file (.pdb, .cif, or .mmcif) to the Foldseek web API and search databases such as PDB, AlphaFold, CATH, and MGnify. Use ONLY when the user provides a physical structure file and wants structural homologs. Public data, no credential needed.