evo-design/proto-language

implement-constraint

Implements, modifies, or debugs constraints in the proto-language DSL. Covers the full lifecycle: BaseConfig class with ConfigField, scoring function returning list[ConstraintOutput], @constraint decorator registration, 3-level export chain, and pytest test…

implement-generator

Implements, modifies, or debugs generators in the proto-language DSL. Covers the full lifecycle: config class, Generator subclass with __init__/assign/sample, input_type-specific patterns (mutation, autoregressive, inverse folding, gradient), decorator…

implement-optimizer

Implements, modifies, or debugs optimizers in the proto-language DSL. Covers the full lifecycle: BaseOptimizerConfig with ConfigField, Optimizer subclass with __init__/run, dual-pool architecture (result/proposal sequences), constraint evaluation (filter +…

write-program

Composes proto-language optimization programs in Python. Covers Segments, Constructs, Generators, Constraints, Optimizers, and Programs for designing biological sequences. Use when writing programs, composing optimization pipelines, designing DNA/protein/RNA…