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Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
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| name | mcpmed-bioinformatics-server |
| description | Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser. |
| license | MIT |
| metadata | {"author":"Artificial Intelligence Group","version":"1.0.0"} |
| compatibility | [{"system":"Python 3.10+"}] |
| allowed-tools | ["run_shell_command"] |
Adapts the Model Context Protocol (MCP) to bioinformatics web server backends. This creates a standardized, machine-actionable layer for LLMs to interact with external biological resources, matching the 2026 standard for agentic tools.
User: "Query the STRING database for interactions with TP53."
Agent Action:
python3 -m mcpmed.cli query string --gene TP53