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Calculate breeding timelines and cage requirements for transgenic mouse colonies
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Based on SOC occupation classification
| name | mouse-colony-planner |
| description | Calculate breeding timelines and cage requirements for transgenic mouse colonies |
| version | 1.0.0 |
| category | Wet Lab |
| tags | [] |
| author | AIPOCH |
| license | MIT |
| status | Draft |
| risk_level | Medium |
| skill_type | Tool/Script |
| owner | AIPOCH |
| reviewer | |
| last_updated | 2026-02-06 |
Calculate timelines and cage numbers required for transgenic mouse breeding to optimize breeding costs.
python scripts/main.py --scheme <breeding_scheme> --females <number_of_females> --males <number_of_males> [options]
| Parameter | Description | Default |
|---|---|---|
--scheme | Breeding scheme: heterozygote, homozygote, conditional | Required |
--females | Starting number of females | Required |
--males | Starting number of males | Required |
--gestation | Gestation period (days) | 21 |
--weaning | Weaning age (days) | 21 |
--sexual-maturity | Sexual maturity age (days) | 42 |
--cage-capacity | Maximum cage capacity | 5 |
--cage-cost | Cage cost per day (CNY) | 3.0 |
--genotyping-cost | Genotyping cost per mouse (CNY) | 15.0 |
--target-pups | Target number of specific genotype mice | 10 |
# Heterozygote breeding scheme, starting with 10 females and 5 males, target to obtain 10 heterozygote offspring
python scripts/main.py --scheme heterozygote --females 10 --males 5 --target-pups 10
# Homozygote breeding, custom cycle parameters
python scripts/main.py --scheme homozygote --females 20 --males 10 --target-pups 20 --gestation 21 --weaning 21
# Conditional knockout scheme
python scripts/main.py --scheme conditional --females 15 --males 15 --target-pups 15
| Risk Indicator | Assessment | Level |
|---|---|---|
| Code Execution | Python/R scripts executed locally | Medium |
| Network Access | No external API calls | Low |
| File System Access | Read input files, write output files | Medium |
| Instruction Tampering | Standard prompt guidelines | Low |
| Data Exposure | Output files saved to workspace | Low |
# Python dependencies
pip install -r requirements.txt