Run any Skill in Manus with one click

simple-main-ctf

Stars27

Forks10

UpdatedJune 27, 2026 at 15:41

Use when working in SIMPLE's src/main/ctf subsystem, including microscope contrast transfer function models, anisotropic/patched CTF estimation, fitting cost functions, and iterative estimation workflows.

Installation

Install with Codex or Claude Copy this prompt, paste it into Codex, Claude, or another assistant, and let it review the skill page and install it for you.

Run Skill in Manus

Source

hael

hael/SIMPLE

View GitHub Repository View Creator Repositories

Download

Run Skill in Manus

Related occupationsSOC

Based on SOC occupation classification

Software DevelopersComputer and Mathematical Occupations·SOC 15-1252

SKILL.md

readonly

name	simple-main-ctf
description	Use when working in SIMPLE's src/main/ctf subsystem, including microscope contrast transfer function models, anisotropic/patched CTF estimation, fitting cost functions, and iterative estimation workflows.

SIMPLE `src/main/ctf`

This folder owns CTF modeling and estimation.

Read First

simple_ctf.f90
simple_ctf_estimate_cost.f90
simple_ctf_estimate_fit.f90
simple_ctf_estimate_iter.f90

Connections

Preprocessing and motion-correction workflows often feed or consume CTF results
image/, motion/, project/, and exec/commanders are common neighboring folders

Working Rule

Separate the microscope model from estimation-loop policy when making changes; many bugs come from blending those concerns.

More from this repository

same repository

simple-main-nano

hael/SIMPLE

Use when working in SIMPLE's src/main/nano subsystem, including nanoparticle and molecule data structures, graphene and time-series helpers, and the SINGLE-specific domain logic that supports liquid-cell and nanoparticle workflows.

2026-07-2127

simple-abinitio2d

hael/SIMPLE

Use when working on SIMPLE's abinitio2D workflow and its cluster2D stages, including 2D search strategies, probabilistic 2D sampling, class-average restoration, distributed partial class-average assembly, online matcher particle I/O, project updates, and streaming/rejection helpers.

2026-06-2827

simple-cluster-cavgs-quality

hael/SIMPLE

Use when working on SIMPLE's model_cavgs_rejection application, simple_cavg_quality feature-space selector, class-average quality selection, quality_mode=analyze outputs, cavgs_quality feature/reference tables, chunk vs pool rejection tuning, or microchunk quality-vector integration.

2026-06-2827

simple-frac-update-trailing

hael/SIMPLE

Use when studying, explaining, or modifying SIMPLE's fractional-update and trailing-reconstruction workflow, including update_frac sampling, sampled/updatecnt bookkeeping, matcher reconstruction I/O, partial even/odd reconstruction handoff, rec3D/volassemble ownership, downsampling compatibility, obsfield mirrors, and stage-to-stage previous-reference contracts.

2026-06-2827

simple-main-stream

hael/SIMPLE

Use when working in SIMPLE's src/main/stream subsystem, including online/mini-stream orchestration, chunk and microchunk processing, staged pipeline steps, watchers, queue/message definitions, and streaming variants of preprocessing and cluster2D workflows.

2026-06-2827

simple-microchunk-rejection

hael/SIMPLE

Use when working on SIMPLE's streaming microchunk class-average rejection, simple_microchunked2D lifecycle sentinels, pass-1/pass-2/refchunk/match generation, skip_pass_2 behavior, simple_cluster2D_rejector criteria, or boundaries with model_cavgs_rejection.

2026-06-2827

Run any Skill with one click

simple-main-ctf

SIMPLE src/main/ctf

Read First

Connections

Working Rule

More from this repository

More from this repository

SIMPLE src/main/ctf

Read First

Connections

Working Rule

SIMPLE `src/main/ctf`

SIMPLE `src/main/ctf`