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Search PubMed database for scientific articles and publications to retrieve biomedical literature.
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| name | pubmed-article-search |
| description | Search PubMed database for scientific articles and publications to retrieve biomedical literature. |
| license | MIT license |
| metadata | {"skill-author":"PJLab"} |
import asyncio
import json
from mcp.client.streamable_http import streamablehttp_client
from mcp import ClientSession
class ToolUniverseClient:
def __init__(self, server_url: str, api_key: str):
self.server_url = server_url
self.api_key = api_key
self.session = None
async def connect(self):
try:
self.transport = streamablehttp_client(url=self.server_url, headers={"SCP-HUB-API-KEY": self.api_key})
self.read, self.write, self.get_session_id = await self.transport.__aenter__()
self.session_ctx = ClientSession(self.read, self.write)
self.session = await self.session_ctx.__aenter__()
await self.session.initialize()
return True
except Exception as e:
return False
async def disconnect(self):
if self.session:
await self.session_ctx.__aexit__(None, None, None)
if hasattr(self, 'transport'):
await self.transport.__aexit__(None, None, None)
def parse_result(self, result):
try:
if hasattr(result, 'content') and result.content:
content = result.content[0]
if hasattr(content, 'text'):
return json.loads(content.text)
return str(result)
except Exception as e:
return {"error": f"parse error: {e}", "raw": str(result)}
## Initialize and use
client = ToolUniverseClient("https://scp.intern-ai.org.cn/api/v1/mcp/36/ToolUniverse", "<your-api-key>")
await client.connect()
result = await client.session.call_tool("PubMed_search_articles", arguments={"query": "protein", "limit": 10})
result_data = client.parse_result(result)
for i, article in enumerate(result_data, 1):
print(f"{i}. {article['title']}")
print(f" Authors: {', '.join(article['authors'][:3])}")
print(f" Journal: {article['journal']} ({article['year']})")
print(f" DOI: {article['doi']}")
print(f" URL: {article['url']}\n")
await client.disconnect()
PubMed_search_articlesquery (str) - Search query, limit (int) - Max results