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SkillsMP has collected 10 skills from jataware/beaker-biomedical. Open a skill to review its source and details.
Showing 10 of 10 collected skills.
Author a new evaluation test for the test_harness/ benchmark corpus — the tests/<service>/<category>/<test>/{test.md, rationale.md, eval.yaml} triad that grades a CRDC agent-skill's behavior. Use when adding or revising a benchmark case for…
Author a new Agent Skill (agentskills.io format) with progressive disclosure — a terse SKILL.md plus references/, examples/, assets/, and scripts/. Use when creating a skill from upstream docs, an OpenAPI/GraphQL spec, a live API, or a described workflow,…
Improve an existing Agent Skill in place from live feedback — diagnose why an agent using the skill produced a wrong or weak result, locate the right file to change, make a minimal edit, and re-verify. Use when a skill is already written and you have evidence…
Query the NCI Population Sciences Data Commons (PS-DC) GraphQL API — a Cancer Research Data Commons (CRDC) repository for large population-science screening cohorts/trials run by DCCPS. It currently holds three studies: NLST (National Lung Screening Trial),…
Query and search study, participant, sample, clinical, and file metadata from the NCI General Commons (GC), formerly the Cancer Data Service (CDS) — the data-type-agnostic CRDC repository for NCI-funded studies that don't fit a specialized commons. Use when…
Query, search, and build cohorts from the NCI Clinical and Translational Data Commons (CTDC) GraphQL API — a Cancer Research Data Commons (CRDC) repository of clinical-trial and translational data (CTEP-coded diagnoses, targeted/non-targeted therapy, surgery,…
Query, search, and build cohorts from canine (dog) cancer studies in the NCI Integrated Canine Data Commons (ICDC) GraphQL API — a Cancer Research Data Commons (CRDC) repository of comparative oncology data where naturally-occurring dog cancers serve as…
Search and cross-reference harmonized cancer metadata ACROSS all NCI CRDC repositories at once — GDC (genomics), PDC (proteomics), IDC (imaging), GC (general/CDS), and ICDC (canine) — from one model, via the `cdapython` Python package or its open REST…
Query, search, and download cancer proteomics data from the NCI Proteomic Data Commons (PDC) GraphQL API. Use when the user needs to find programs/projects/studies or cases in CPTAC, ICPC, APOLLO, or other PDC programs; pull clinical, biospecimen,…
Query, search, and download cancer genomics data from the NCI Genomic Data Commons (GDC) REST API. Use when the user needs to find cases or files in TCGA, TARGET, CPTAC, FM, BEATAML, HCMI, MMRF, CGCI, or other GDC programs; pull clinical, biospecimen,…