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SkillsMP has collected 292 skills from lamm-mit/scienceclaw. Open a skill to review its source and details.
lamm-mit/scienceclawShowing 40 of 292 collected skills.
Guided statistical analysis with test selection and reporting. Use when you need help choosing appropriate tests for your data, assumption checking, power analysis, and APA-formatted results. Best for academic research reporting, test selection guidance. For…
ToolUniverse workflow — Statistical Modeling
Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with detailed diagnostics, residuals, and inference. Best for econometrics, time series, rigorous inference with coefficient tables. For guided…
Render publication-quality PNG views of any binary STL file — isometric (3-D perspective), top-down XY projection, and XZ cross-section at Y midpoint. All dimensions derived from the STL bounding box; nothing hardcoded. Optionally uploads to imgur and returns…
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
ToolUniverse workflow — Structural Variant Analysis
Identify peptide–protein contact hotspots from a PDB structure (local file or fetched from RCSB) and emit binding hotspot positions.
Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives, integrals, limits), manipulating algebraic…
ToolUniverse workflow — Systems Biology
ToolUniverse workflow — Target Research
Predict binding-related effects (ADMET) using TDC models from Hugging Face
Access 1000+ scientific tools from Harvard's ToolUniverse — bioinformatics, drug discovery, genomics, clinical research, and more
Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, molecular property prediction, for geometric deep learning.
PyTorch-native graph neural networks for molecules and proteins. Use when building custom GNN architectures for drug discovery, protein modeling, or knowledge graph reasoning. Best for custom model development, protein property prediction, retrosynthesis. For…
This skill should be used when working with pre-trained transformer models for natural language processing, computer vision, audio, or multimodal tasks. Use for text generation, classification, question answering, translation, summarization, image…
Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management.…
UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific…
Protein sequence, function, and annotation lookup. Query MUST be a bare gene symbol or protein name — 1 to 3 words maximum. Valid examples: 'KRAS', 'EGFR', 'BTK', 'TP53', 'Bruton tyrosine kinase', 'P01116'. If the topic is 'sotorasib KRAS G12C', the correct…
Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions, TSDR, for IP analysis and prior art searches.
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame operations, lazy evaluation, fast aggregations, efficient visualization of big data, and machine learning on…
ToolUniverse workflow — Variant Analysis
ToolUniverse workflow — Variant Interpretation
Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF,…
Search the web for scientific information using DuckDuckGo
Extract and preview data from Excel and CSV spreadsheets for scientific analysis
Chunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatible, for large-scale scientific computing pipelines.
Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.
Cognitive pattern extraction system that maps unique thinking fingerprints through structured analysis of reasoning, creativity, emotion, and ethics. Identifies decision patterns and thinking topology. Use for author characterization, team composition…
Comprehensive geospatial science skill covering 70+ topics in remote sensing, GIS, spatial analysis, and machine learning for Earth observation. Processes satellite imagery (Sentinel, Landsat, MODIS), vector/raster data, point clouds. Supports 8 programming…
Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use for rare disease gene discovery, phenotype-to-gene mapping, cross-species disease…
RNA velocity analysis with scVelo. Estimate cell state transitions from unspliced/spliced mRNA dynamics, infer trajectory directions, compute latent time, and identify driver genes in single-cell RNA-seq data. Complements Scanpy/scVI-tools for trajectory…
Document toolkit (.docx). Create/edit documents, tracked changes, comments, formatting preservation, text extraction, for professional document processing.
PDF manipulation toolkit. Extract text/tables, create PDFs, merge/split, fill forms, for programmatic document processing and analysis.
Presentation toolkit (.pptx). Create/edit slides, layouts, content, speaker notes, comments, for programmatic presentation creation and modification.
Generate comprehensive one-page commodity profiles with production, trade, risk, research, policy, and web intelligence data
Monitor government and regulator releases relevant to critical minerals and materials via domain-targeted web discovery with policy tagging
Discover critical-minerals and materials signals from newspapers, blogs, and industry media using web search, with normalized policy/commodity tagging
Ingest and normalize web pages for critical-minerals intelligence, with optional Firecrawl fetching, deduplication manifest, and JSONL export
Query BGS World Mineral Statistics for production, imports, and exports by commodity, country, and year