Lord1Egypt/ai-skillforge - Page 2

agent-prompt-session-search

Subagent prompt for searching past Claude Code conversation sessions by scanning .jsonl transcript files and returning matching session IDs

agent-prompt-session-title-and-branch-generation

Agent for generating succinct session titles and git branch names

agent-prompt-simplify-slash-command

Instructions for the /simplify slash command that reviews changed code for reuse, simplification, efficiency, and altitude cleanups, then applies the fixes

agent-prompt-status-line-setup

System prompt for the statusline-setup agent that configures status line display

agent-prompt-webfetch-summarizer

Prompt for agent that summarizes verbose output from WebFetch for the main model

agent-prompt-worker-fork

System prompt for a forked worker sub-agent that executes a single directive from the parent agent and reports back concisely

agent-prompt-workflow-subagent-plain-text-output

Instructs an internal workflow subagent to return its final text verbatim as the calling workflow script's parsed result

agent-prompt-workflow-subagent-structured-output

Instructs an internal workflow subagent to return its final answer by calling the StructuredOutput tool exactly once with schema-valid input

anndata

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for…

arboreto

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and…

astropy

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems…

audio-intelligence

Native audio understanding, transcription, speech tone analysis, sound classification, and multi-speaker transcription.

autoskill

Observe the user's screen via screenpipe, detect repeated research workflows, match them against existing scientific-agent-skills, and draft new skills (or composition recipes that chain existing ones) for the patterns not yet covered. Use when the user asks…

aws-s3-storage

Uploading, downloading, and managing static file assets in Amazon Web Services S3 Buckets using Boto3.

beautifulsoup-scraping

Parsing HTML web structures, searching tags, and extracting text using BeautifulSoup4.

benchling-integration

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

biopython

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick…

bioservices

Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database…

cellxgene-census

Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your…

cirq

Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use…

citation-management

Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify…

claude-system-prompt

Operational rules, safety instructions, reasoning guidelines, and behavioral patterns from the Claude 3.7 Sonnet system prompt.

climate-data-analysis

Climate and Earth system data analysis using xarray, cartopy, cfgrib, and CMIP6/ERA5 datasets. Use for loading NetCDF/GRIB climate data, computing climatologies, spatial aggregation, anomaly detection, bias correction, and publication-quality climate maps.…

clinical-decision-support

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with…

clinical-reports

Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates,…

cobrapy

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

code-execution

Enabling Gemini's native sandboxed Python runtime, capturing code outputs, and mathematical/scientific executions.

context-caching

Large context caching, cached token management, TTL config, and cost optimization.

crispr-screen-analysis

CRISPR genetic screen analysis using MAGeCK, CRISPRclean, and crispy. Use for pooled CRISPR knockout/activation screens, sgRNA count normalization, gene essentiality scoring, hit calling, pathway enrichment, and QC of CRISPR screen data. Supports both…

cron-scheduling

Scheduling recurring scripts, parsing crontab syntax, and implementing scheduled background loops.

cryptography-api

Symmetric/asymmetric encryption, hashing, password salting, and message verification via cryptography library.

dask

Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy code beyond memory or across clusters. Best for parallel file processing, distributed ML, integration with existing pandas code. For out-of-core…

data-anthropic-cli

Reference documentation for the ant CLI covering installation, authentication, command structure, input and output shaping, managed agents workflows, and scripting patterns

data-assistant-voice-and-values-template

Template content for an assistant.md file describing Claude's voice, values, and communication style

data-claude-api-reference-c

C# SDK reference including installation, client initialization, basic requests, streaming, and tool use

data-claude-api-reference-curl

Raw API reference for Claude API for use with cURL or else Raw HTTP

data-claude-api-reference-go

Go SDK reference

data-claude-api-reference-java

Java SDK reference including installation, client initialization, basic requests, streaming, and beta tool use

data-claude-api-reference-php

PHP SDK reference

data-claude-api-reference-python

Python SDK reference including installation, client initialization, basic requests, thinking, and multi-turn conversation