MikeTreml/MissionControl - Page 15

megahit-assembler

MEGAHIT metagenomic assembly skill for reconstructing genomes from short reads

metaphlan-profiler

MetaPhlAn metagenomic profiling skill for species-level community composition

nextflow-pipeline-executor

Nextflow workflow management skill for reproducible bioinformatics pipelines

perseus-statistical-analyzer

Perseus statistical analysis skill for proteomics data analysis and visualization

pharmgkb-annotator

PharmGKB pharmacogenomics annotation skill for drug-gene interaction assessment

phylogenetics-tree-builder

Phylogenetic analysis skill for constructing evolutionary trees and assessing relationships

pymol-visualizer

PyMOL molecular visualization skill for structure rendering and analysis

qiime2-microbiome-analyzer

QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis

rdkit-chemoinformatics

RDKit chemoinformatics skill for molecular property calculation and compound library management

salmon-quantifier

Salmon pseudo-alignment skill for fast and accurate transcript quantification

samtools-bam-processor

BAM/SAM file manipulation skill for sorting, indexing, filtering, and extracting alignment data

seurat-single-cell-analyzer

Seurat single-cell analysis skill for clustering, annotation, and trajectory analysis

singularity-container-manager

Singularity container management skill for HPC-compatible containerized execution

snakemake-workflow-manager

Snakemake workflow management skill for rule-based pipeline execution

star-rnaseq-aligner

STAR alignment skill for splice-aware RNA-seq read mapping with comprehensive QC metrics

string-network-analyzer

STRING protein interaction network skill for functional enrichment and network visualization

structural-variant-detector

Structural variant detection skill for identifying CNVs, inversions, translocations, and complex rearrangements

tmb-msi-calculator

Tumor mutation burden and microsatellite instability calculation skill for immunotherapy biomarkers

ucsc-genome-browser-querier

UCSC Genome Browser query skill for genome annotation retrieval and track data access

vep-variant-annotator

Variant Effect Predictor skill for comprehensive variant annotation with clinical database integration

adverse-event-reporter

Adverse event monitoring and reporting skill for MDR/MEDWATCH compliance

aiml-validation-framework

AI/ML medical device validation skill implementing FDA's GMLP principles

biocompatibility-test-selector

Biocompatibility test selection and protocol recommendation skill based on device categorization

bioreactor-protocol-generator

Bioreactor culture protocol development skill for tissue construct maturation

clinical-literature-reviewer

Systematic literature review skill for clinical evaluation supporting regulatory submissions

clinical-study-designer

Clinical study design skill for medical device trials including IDE studies and post-market studies

cybersecurity-risk-assessor

Medical device cybersecurity risk assessment skill per FDA premarket and postmarket guidance

design-fmea-generator

Design Failure Mode and Effects Analysis (DFMEA) skill for systematic design risk identification

design-review-facilitator

Design review planning and execution skill for structured design phase gate reviews per 21 CFR 820.30

dicom-conformance-validator

DICOM conformance testing and integration skill for medical imaging systems

eu-mdr-gspr-mapper

EU MDR General Safety and Performance Requirements (GSPR) mapping and compliance documentation skill

extractables-leachables-analyzer

E&L study design and data analysis skill for chemical characterization of medical devices

fatigue-life-predictor

Fatigue life prediction skill for implants and load-bearing devices using validated approaches

fda-510k-submission-generator

Automated 510(k) premarket notification preparation for generating submission packages, predicate device comparisons, and substantial equivalence arguments

fea-mesh-generator

Finite element mesh generation skill optimized for biomedical geometries including implants, anatomical structures, and tissue models

iec62304-lifecycle-manager

Medical device software lifecycle management skill implementing IEC 62304 requirements

image-algorithm-validator

Medical image processing algorithm validation skill for segmentation, detection, and analysis algorithms

iso-standards-compliance-checker

Medical device standards compliance verification skill for ISO 13485, ISO 14971, IEC 62304, IEC 60601, and related standards

iso10993-evaluator

Biological evaluation planning skill implementing ISO 10993-1 for biocompatibility testing strategy

iso14971-risk-analyzer

Comprehensive risk management skill implementing ISO 14971:2019 methodology for medical device risk analysis