Execute the project epic development workflow for Codex. Use when the user asks for "epic dev", "epic-dev", "/epic-dev", "run the epic workflow", "create an epic", "resume the epic", "--resume", "--next-phase", "--finalize", phased feature delivery, sprint…
neuromechanist/research-skills
SkillsMP has collected 37 skills from neuromechanist/research-skills. Open a skill to review its source and details.
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Skills in this repository
Showing 37 of 37 collected skills.
Review pull requests and recent code changes across specialized lenses: general code quality, tests, error handling and silent failures, comments and docs, type design, and simplification. Use when the user asks to review a PR, review recent changes, check…
Use when starting work in an existing repository or before a review, planning, or GitHub operation to identify the repository, worktree, shell, terminal, GitHub CLI, credential inheritance, and native-agent surfaces.
This skill should be used when the user asks to "update rules", "sync rules", "update AGENTS.md", "update CLAUDE.md", "refresh rules", "update project config", "sync templates", "update vibe rules", "check for rule updates", "update user rules", "update…
Use this skill for "format manuscript", "prepare for submission", "journal formatting", "LaTeX template", "submission checklist", "format references", "BibTeX", "author guidelines", "page limits", "format for Nature", "format for IEEE", or when the user wants…
Use this skill for "initialize project", "set up project", "scaffold project", "create AGENTS.md", "create CLAUDE.md", "set up rules", "create context directory", "vibe rules", "project templates", "init new project", "set up development structure", "create…
This skill should be used when the user asks to "review a grant", "review my proposal", "score this grant", "evaluate my specific aims", "critique my research strategy", "review as an NIH reviewer", "review as an NSF panelist", "give me reviewer feedback",…
This skill should be used when the user asks to "write a grant proposal", "draft specific aims", "write a research strategy", "create an NIH proposal", "create an NSF proposal", "write a significance section", "write an innovation section", "write an approach…
Use this skill when the user asks to "make an icon", "generate an icon", "create a scientific icon", "make a transparent icon", "make a minimal icon", "icon for a figure", "icon for a paper", "generate an icon set", "batch icons", or wants flat scientific…
Use this skill when the user asks to "generate an AI figure", "make an AI-generated figure", "make a poster figure", "make a presentation figure", "generate a figure with AI", "generate figure panels with Codex", "make a multi-panel AI figure", "AI background…
Use this skill when the user asks to "make a figure bible", "set up a style bible", "create a figure theme", "make a theme for my figures", "set up a figure style", "palette for my paper figures", or wants a consistent figure style. Scaffolds and validates…
Use this skill to QA a scientific figure for journal compliance, alignment, palette correctness, and text legibility. Triggers on "QA this figure", "check this figure", "review my figure", "is this figure paper-ready", "validate figure", "check the text in…
This skill should be used when the user asks to "plot data", "make a plot for a paper", "make a publication plot", "create a journal-quality plot", "matplotlib for a figure", "use seaborn", "use plotnine", "use ggplot in Python", "improve plot quality",…
This skill should be used when the user asks to "create an SVG figure", "make a schematic", "draw a diagram", "create a schematic diagram", "draw a flowchart", "draw a process flow", "draw a workflow", "draw a workflow diagram", "make an SVG schematic",…
This skill should be used when the user asks to "create a figure", "make a scientific figure", "create a paper figure", "make a figure for my paper", "make a figure for my manuscript", "compose figure panels", "assemble figure panels", "combine figure…
Use when the user asks to build a programmatic SVG schematic in Python: flowcharts, boxes and arrows, auto-fit SVG text, mm-precise diagrams, edge-snapped arrows, tangent-correct curve arrowheads, orthogonal or Manhattan routing, deterministic z-order layers,…
Use this skill for "humanize this text", "remove AI tells", "make this less AI-sounding", "strip AI patterns", "de-AI my writing", "reduce AI-isms", "final natural-writing pass", "check for AI vocabulary", "em dash overuse", "rule of three overuse", "AI…
Use this skill for "literature review workflow", "multi-phase lit review", "direction paper", "review paper protocol", "strand-based literature review", "citation-grounded review", "systematic lit review with paper cards", "build a lit review corpus", "lit…
Use this skill for "write a paper", "draft manuscript", "write introduction", "write methods section", "write results", "write discussion", "write abstract", "structure a paper", "academic writing", "write for journal", or when the user wants to draft or…
Use this skill for "review this paper", "review this manuscript", "peer review", "review my paper", "critique this manuscript", "review this submission", "give me feedback on my paper", "check my methods", "review my statistics", "review as a peer reviewer",…
This skill should be used when executing the epic-dev workflow, creating epic branches, managing sprint phases, working with git worktrees for phased feature development, or when the user mentions "epic dev", "epic-dev", "/epic-dev", "epic workflow", "sprint…
Use this skill to review grant proposal figures for compliance, resolution, accessibility, and quality. Triggers on "check grant figures", "review proposal figures", "figure QA for grant", "NIH figure requirements", or when preparing a grant for submission.
This skill should be used when the user says "spin up a RunPod pod", "rent a GPU", "run this on a cloud GPU", "RunPod", "prebake a GPU image", "my pod takes 10 minutes to install", "boot-to-ready", "which GPU should I rent", "2x A100 or 1x H100", "is Modal…
Use this skill when the user asks to "fan out agents", "spawn agents", "use an agent team", "parallel agents", "delegate to subagents", "act as team lead", "orchestrate implementation", "fan out teammates", or when a task decomposes into 2+ independent work…
Use this skill when the user asks to "explore this codebase", "understand this repo", "map the architecture", "review our stack", "get up to speed", "break ground" on an unfamiliar project or research field, "what is the state of this project", "audit the…
Use this skill when the user asks to "implement this change", "fix this issue", "add this feature", "make this change properly", "ship this", or for any ordinary single-PR development task: one issue, one branch, one pull request. For multi-phase features use…
Use this skill when the user asks to "plan this feature", "write an implementation plan", "design before coding", "think through the approach", "review this plan", or before any multi-file change, architectural decision, experiment with a go/no-go outcome, or…
Install, update, or audit general user-level AI coding instructions across Claude Code, OpenAI Codex, GitHub Copilot CLI, and Cursor. Use when the user asks to set up global instructions, personal AGENTS.md or CLAUDE.md defaults, configure instructions for…
Use this skill when the user asks to "debug", "find the root cause", "figure out why X fails", "investigate this bug", "this test is flaky", "the build broke", "production incident", "why is the output wrong", or when any observed behavior contradicts…
This skill should be used when the user says "security audit", "check for vulnerabilities", "security review", "harden project", "dependency audit", "credential scan", "check for secrets", "scan for secrets", "OWASP review", "security checklist", "audit…
This skill should be used when the user asks to "create a presentation", "make slides", "build a slide deck", "create a talk", "make a keynote", "create a Reveal.js presentation", "generate presentation slides", "make a conference talk", "create a lecture",…
Use this skill for "convert to BIDS", "BIDS format", "create BIDS dataset", "BIDS sidecar", "participants.tsv", "events.tsv", "EEG BIDS", "EMG BIDS", "MEG BIDS", "fMRI BIDS", "BIDS validator", "channel locations", "electrode positions", "BIDS metadata", or…
Use this skill for "design experiment", "create PsychoPy experiment", "stimulus presentation", "experiment protocol", "timing validation", "trial structure", "block design", "event-related design", "PsychoPy builder", "create stimuli", "LSL markers", "Lab…
This skill should be used when the user says "set up CI", "create GitHub Actions", "scaffold CI pipeline", "add CI/CD", "configure continuous integration", "create test workflow", "create release workflow", "add pre-commit hooks", "set up linting pipeline",…
This skill should be used when the user says "create Dockerfile", "dockerize project", "Docker packaging", "container setup", "multi-stage build", "Docker Compose", "containerize application", "create docker-compose.yml", "create .dockerignore", "optimize…
This skill should be used when the user says "process documents", "extract text from PDF", "OCR this document", "convert PDF to markdown", "extract emails from documents", "parse document", "document conversion", "batch OCR", "extract structured data from…
Use this skill for "search for papers", "find citations", "look up a DOI", "get BibTeX", "download PDF", "convert PDF to markdown", "find canonical papers", "convert identifiers", "batch download papers", "configure opencite", "literature review", "find…