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Follow https://skillsmp.com/skill-install/prompt.md to install Agent Skills from https://github.com/nextflow-io/claude-plugin.Loading the repository README…
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Install or upgrade Nextflow on the user's machine. Use when the user wants to install Nextflow, check their current Nextflow version, upgrade Nextflow, or set up the prerequisites (Java 17+) needed to run Nextflow.
INVOKE THIS SKILL IMMEDIATELY when user asks to: write/create/build a Nextflow pipeline or workflow, create any bioinformatics pipeline (RNA-seq, DNA-seq, variant calling, ChIP-seq, etc.), or compose/chain nf-core modules. This skill handles all Nextflow…
Launch Nextflow pipeline executions on cloud and HPC clusters via Seqera Platform. Use when the user wants to run/launch/submit a pipeline on a cloud or cluster compute environment, configure a compute environment, push pipeline changes to GitHub before…
Run Nextflow modules natively using `nextflow module` commands. Use when running, listing, or getting info about Nextflow modules.
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