ngs-runtime-env

Check whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline.

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Repository: openai/plugins
Last source activity: June 3, 2026 at 15:08
Detected SKILL.md language: English
Stars: 7,904
Forks: 1,014

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name	ngs-runtime-env
description	Check whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline.

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openai-platform-api-key

Use when Codex is asked to build, run, test, debug, or configure an OpenAI-backed or provider-unspecified AI app, UI, script, CLI, generator, or tool, especially requests phrased only as "using AI" or generators driven by forms/user input; also use for OPENAI_API_KEY or sk-proj setup. Do not gate model or prompt migrations that can proceed with source edits and offline validation. Otherwise treat this as the credential gate: inspect safely, ask reuse-vs-new before API work, and never expose plaintext.

2026-11-03

assess-patch-risk

Assess an immutable patch artifact's program impact, regression risk, and auto-merge eligibility. Use for generated patch files, provider pull-request diffs, or commit ranges when reviewers need evidence about affected runtime paths, contracts, tests, and recoverability. This skill is read-only and does not generate, edit, apply, push, or merge the patch.

2026-10-08

attack-path-analysis

Use when Codex is already in the attack-path-analysis phase of a security scan or the user explicitly asks to trace a security finding from source to sink and calibrate severity. Do not use as the primary trigger for full PR, commit, branch, patch, or repository scans.

2026-10-08

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ngs-runtime-env

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