drugbank-query

name	drugbank-query
description	Query a locally downloaded DrugBank database. Use whenever the user asks about drug information, drug targets, drug-drug interactions, drug categories, or wants to look up any entity (DrugBank ID, drug name, CAS number, synonym) in DrugBank.

DrugBank Local Query Skill

Search local DrugBank data by any entity. Auto-detects query type:

Input Pattern	Detected As	Match Logic
DB00945	DrugBank ID	exact on drugbank_id
anything else	free text	substring on name, synonyms, cas_number

Data

• Base dir: resources_metadata/drug_knowledgebase/DrugBank/
• Files:
  • full database.xml — rich fields: description, targets, interactions, categories, synonyms, groups
  • drugbank vocabulary.csv — lightweight: DrugBank ID, name, CAS, synonyms
• Auto-select: prefers XML if present, falls back to vocabulary CSV

API

Function	Input	Returns
load(path)	file path (XML or TSV/CSV, auto-detected)	list[dict]
search(data, entity)	single entity string	list[dict]
search_batch(data, entities)	list or comma-separated string	dict[str, list[dict]]
summarize(hits, entity)	hit list + label	compact text
to_json(hits)	hit list	JSON string

Usage

from 07_DrugBank import load, search, search_batch, summarize, to_json

data = load()                              # auto-selects XML or CSV

# single query
hits = search(data, "aspirin")
print(summarize(hits, "aspirin"))

# batch query
results = search_batch(data, ["metformin", "DB00316", "ibuprofen"])
for entity, hits in results.items():
    print(summarize(hits, entity))

# JSON output
print(to_json(hits[:1]))

See if __name__ == "__main__" block in 07_DrugBank.py for runnable examples.