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Invoke for claims.json final output format reference. Defines the schema for aggregated claims across all investigations.
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Based on SOC occupation classification
| name | write-claims |
| description | Invoke for claims.json final output format reference. Defines the schema for aggregated claims across all investigations. |
Write to /workspace/run/claims.json. This is the final output file aggregating all claims from all investigations. Updated incrementally after each judge evaluation, finalized at the end of exploration.
| Field | Type | Required | Description |
|---|---|---|---|
task_id | string | yes | From task_packet.json |
claims | array | yes | All claims from all investigations (see below) |
top_supported_claim_id | string | yes | The claim ID of the strongest overall finding. Set at finalization. |
investigation_summary | array | yes | Summary of each investigation's outcome (see below) |
| Field | Type | Required | Description |
|---|---|---|---|
claim_id | string | yes | Claim identifier (e.g. I1-claim1) |
investigation_id | string | yes | Which investigation produced this claim |
investigation_name | string | yes | Short label of the investigation |
role | string | yes | One of: main, alternative_explanation, artifact_check, robustness |
text | string | yes | Claim statement with key finding and numbers |
status | string | yes | One of: supported, weakened, refuted, inconclusive |
confidence | number | yes | Judge's calibrated confidence (0-1) |
dimensions | object | yes | See dimensions below |
evidence_refs | array of strings | yes | Experiment IDs that produced evidence for this claim |
supporting_stats | object | no | Key statistics from the experiments |
| Field | Type | Required | Description |
|---|---|---|---|
variables | array of strings | yes | Column names involved |
relation | string | yes | Type of relationship found |
context | string | yes | Analysis context description |
direction | string | yes | Direction or nature of the finding |
| Field | Type | Required | Description |
|---|---|---|---|
investigation_id | string | yes | Investigation identifier |
name | string | yes | Short label |
phenomenon | string | yes | Full phenomenon description |
status | string | yes | Final investigation status |
winning_claim_id | string or null | yes | The claim that best explains the phenomenon |
claim_outcome_counts | object | yes | Counts by claim status: supported, weakened, refuted, inconclusive |
top_supported_claim_id and complete investigation_summary for all investigations.Invoke after experiment-runner completes an investigation's query bundle. Evaluates all claims in current_investigation.json and produces an investigation-level adjudication. Writes claim_scores.json.
Invoke after investigation-decomposition. Runs all queries in an investigation bundle using shared data preparation. Writes code and results.
Invoke after main agent writes L2 assessment. Reads epistemic state (L1/L2), patterns, and investigations to recommend next action. Writes strategy_recommendation.json.
Gene set enrichment analysis (GSEA, Enrichr, over-representation). Invoke when query mentions enrichment, pathway analysis, GO analysis, GSEA, or gene set.
Invoke before running experiments for an investigation. Reads current_investigation.json and task_packet.json, writes current_investigation_requirements.json with shared data preparation and per-query requirements.
Gene ID conversion and annotation. Invoke when you need to map between any gene identifier formats.