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Repository: synthetic-sciences/openscience
Last source activity: August 20, 2026 at 18:37
Detected SKILL.md language: English
Stars: 4,370
Forks: 550

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Follow https://skillsmp.com/skill-install/prompt.md to install only the Agent Skill at https://github.com/synthetic-sciences/openscience/tree/main/backend/cli/skills/research/export.

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SKILL.md

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name: export
description: Package results with provenance, reproduction instructions, declared gaps, and the requested output format.
category: research

# Export Before exporting, read these two files completely and follow them as the full workflow: 1. `../research-workflows/SKILL.md` 2. `../research-workflows/references/export.md` Resolve the exact source artifact, audience, format, and destination. Preserve provenance and report partial exports honestly.

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neuropixels-analysis

Neuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4 spike sorting, quality metrics, Allen/IBL curation, AI-assisted visual analysis, for Neuropixels 1.0/2.0 extracellular electrophysiology. Use when working with neural recordings, spike sorting, extracellular electrophysiology, or when the user mentions Neuropixels, SpikeGLX, Open Ephys, Kilosort, quality metrics, or unit curation.

2026-10-08

plotly

Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboards, exploratory analysis, and presentations. For static publication figures use matplotlib or scientific-visualization.

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Computational cancer genomics workflows. Somatic mutation detection and annotation, structural variation characterization, copy number analysis, tumor purity/ploidy estimation, NMF metagene extraction, and DNA damage response network analysis. For cancer mutation databases use cosmic-database; for variant clinical significance use clinvar-database.

2026-10-05

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