synthetic-sciences/openscience - Page 8

scholar-evaluation

Evaluate scholarly work with structured criteria for rigor, methodology, evidence, writing, and publication readiness.

infographics

[EXPERIMENTAL] Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8 industry styles, and…

matplotlib

Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots…

seaborn

Statistical visualization with pandas integration. Use for quick exploration of distributions, relationships, and categorical comparisons with attractive defaults. Best for box plots, violin plots, pair plots, heatmaps. Built on matplotlib. For interactive…

hugging-face-paper-publisher

Publish and manage research papers on Hugging Face Hub. Supports creating paper pages, linking papers to models/datasets, claiming authorship, and generating professional markdown-based research articles.

latex-posters

Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration,…

markdown-mermaid-writing

Comprehensive markdown and Mermaid diagram writing skill. Use when creating any scientific document, report, analysis, or visualization. Establishes text-based diagrams as the default documentation standard with full style guides (markdown + mermaid), 24…

paper-2-web

This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper…

pptx-posters

Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based…

pyzotero

Interact with Zotero reference management libraries using the pyzotero Python client. Retrieve, create, update, and delete items, collections, tags, and attachments via the Zotero Web API v3. Use this skill when working with Zotero libraries programmatically,…

structure-analysis

Handles protein structure files and geometric criteria so that residue counts, contacts, hydrogen bonds and interfaces are reproducible, covering PDB versus mmCIF, author versus label chains and numbering, HETATM, water and ligand policy, alternate locations,…

atomistic-workflows

Sets up and reports atomistic calculations so they are reproducible and converged, covering ASE Atoms, calculators, optimizers and MD drivers, pymatgen structures, symmetry analysis and the Materials Project API, LAMMPS and GROMACS input basics for molecular…

cheminformatics-definitions

Pins down the RDKit definitions that differ between conventions before computing molecular descriptors, including Lipinski donor and acceptor counts (Lipinski.NumHDonors and NumHAcceptors versus rdMolDescriptors.CalcNumLipinskiHBD and HBA), TPSA with or…

coq

Develops and checks proofs in Coq and its renamed successor Rocq, covering the `_CoqProject` and `coq_makefile` (or `rocq makefile`) build, `coqc` and `coqchk` (or `rocq compile` and `rocq check`), finding lemmas with `Search` and `SearchPattern`, choosing…

lean4-mathlib

Formalizes and checks mathematical statements in Lean 4 with Mathlib, covering the lake project layout and pinned toolchain, `lake exe cache get` before `lake build`, searching Mathlib through Loogle, `exact?`, `apply?` and `simp?`, tactic hygiene, finishing…

astronomy-inference

Carries astronomical data from file to posterior with the conventions the field expects, covering astropy units, coordinates, FITS, WCS and Time with barycentric corrections, photometric systems and magnitude arithmetic, period finding with the astropy…

energy-systems

Applies energy-systems modelling conventions so that capacity, energy, cost and emissions numbers are consistent and comparable, covering kW versus kWh and MW versus MWh, capacity versus energy, capacity factors, load duration curves, the LCOE formula with…

geoscience-data

Reads, transforms and summarizes gridded and geospatial data without losing the metadata that gives it meaning, covering NetCDF and HDF5 through xarray and netCDF4 with CF conventions, dimensions versus coordinates, time encodings and calendars and fill…

patent-mining

Retrieves and interprets patent data with the conventions that make counts and claims defensible, covering Google Patents, Lens, EPO Open Patent Services, USPTO data through PatentsView and the Open Data Portal, and WIPO PATENTSCOPE, together with kind codes,…

reproduce

Reproduces a paper's result, a claim, an artifact or a previous run with the target and success criterion frozen first, the canonical code path run before any substitute, exact inputs, environment, seeds and commands captured, and a verdict from a fixed set,…

research-workflows

Execute the planning, code-review, comparison and export workflows behind the /plan, /review, /compare and /export commands as state machines over OpenScience session state, artifacts and compute. Internal support skill; reproduction, source audits and peer…

ml-benchmark-evaluation

Rigorous methodology for evaluating ML models on established benchmarks. Covers proper train/val/test splits, baseline verification from original papers, exact metric formula discrepancies, data-leak detection checklist, multi-seed robustness, and honest…

zotero-local

Read or search the user's local Zotero reference library when explicitly requested. Uses Zotero's local HTTP API; no cloud sync, library writes, or automatic indexing.

binding-affinity

Empirical affinity estimates, ligand energy inspection, docking-score consensus, and batch virtual screening. Full MM/GBSA requires a validated external workflow.

fireworks-ai-inference

Fast inference and fine-tuning platform with serverless and on-demand GPU deployments. OpenAI-compatible API for chat completions, embeddings, function calling, vision, and structured output. Supports SFT, DPO, and RL fine-tuning. SOC2 + HIPAA compliant.

together-ai-inference

Serverless inference, fine-tuning, embeddings, image generation, and batch processing on 200+ open-source models via an OpenAI-compatible API. Use when you need fast, cost-effective access to open-source LLMs without managing infrastructure.

groq-inference

Ultra-fast LLM inference on custom LPU hardware. OpenAI-compatible API at api.groq.com. Lowest latency in the industry (500-1000+ tok/s). Supports chat completions, vision, audio (Whisper STT + TTS), tool calling, JSON mode, and streaming. Free tier…

givemeanode-agent-compute

Operate GiveMeANode GPU nodes, batch jobs, storage, and rollout sandboxes through its connected MCP server with bounded spend, durable recovery, and explicit approval for paid or destructive actions.

runpod-gpu-cloud

Safely inspect and operate RunPod resources with runpodctl, live product data, and explicit approval before paid or destructive actions.

tensorpool-gpu-cloud

Safely inspect and operate TensorPool GPU clusters and jobs using the current tp CLI, with explicit approval before any billable or destructive action.

vast-ai-gpu-cloud

Safely inspect and operate Vast.ai marketplace instances with the vastai CLI, live offer data, and explicit approval before paid or destructive actions.

prime-intellect

Safely inspect Prime Intellect identity and plan compute or training workflows using the installed prime CLI and current official documentation.

goal

Set an explicit objective, success criteria, and stopping conditions for the current OpenScience session.

checkpoint

Save a local recovery packet from durable session state. Use when the user invokes /checkpoint, asks to preserve progress, or wants a safe restore point before risky or lengthy work.

compact

Compact the current chat context into a concise summary. Use when the user invokes /compact, context capacity is running low, or a long session needs a smaller continuation state.

handoff

Create a self-contained continuation packet for another agent. Use when the user invokes /handoff, asks to transfer work, or needs the current context saved before another agent continues.

init

Create or refresh an AGENTS.md project instruction file. Use when starting work in a repository, onboarding an agent to an unfamiliar codebase, or when the user explicitly invokes /init or asks to initialize project guidance.

plan

Enter read-only plan mode and produce a decision-ready plan. Use when the user invokes /plan, asks to plan before implementation, or needs choices and tradeoffs resolved before execution.

stop

Stop active work in the current session. Use when the user invokes /stop or asks to cancel the current turn, active compute jobs, session kernels, or all running session work.

compare

Compare runs, artifacts, methods, models, or claims on a fair and explicit decision basis.