refseq-nm-cds

name	refseq-nm-cds
description	Use when retrieving RefSeq NM coding sequences for supported species (cow, frog, human, mouse, pig, rat, zebrafish) via the entrez-direct toolkit.
disable-model-invocation	true
user-invocable	true

refseq-nm-cds

Operational EDirect workflow for downloading RefSeq mRNA GenBank flatfiles by species and extracting NM_* CDS intervals/sequences into <species>_cds.txt.

Quick Start

• Command: refseq-nm-cds <species>
• Local executable: /home/vimalinx/miniforge3/envs/bio/bin/refseq-nm-cds
• Supported species/aliases: human|man, mouse|mice, rat, pig, cow, frog, fish|zebrafish, or all

When To Use This Tool

Retrieving NCBI RefSeq NM (mRNA) coding sequences for model organisms. Accepts species name as the sole argument and outputs CDS records. Installed as part of the bioconda entrez-direct package.

Common Patterns

# 1) Download and process the default human set
refseq-nm-cds human