pysam

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

Jump to install Review files

Repository: x-cmd/skill
Last source activity: January 30, 2026 at 12:43
Detected SKILL.md language: English
Stars: 26
Forks: 5

Install options

The review-first prompt is selected by default. You can switch to a direct command or download a local copy.

Install with an AI assistant

Copy this prompt into the AI assistant you're using.

Follow https://skillsmp.com/skill-install/prompt.md to install only the Agent Skill at https://github.com/x-cmd/skill/tree/main/data/k-dense-ai/pysam.

A direct command skips the review prompt. Inspect the source before running it.

npx skills add https://github.com/x-cmd/skill --skill pysam

The command stays on one line. Scroll horizontally to inspect it before copying.

Prefer a local copy? Download the files currently available to SkillsMP.

Review the source files

Read SKILL.md and any companion files shown by SkillsMP before deciding whether to install.

File Explorer

5 files

SKILL.md

Source instructions · Read-only preview

name	pysam
description	Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

Back to search Back to installation

x-is

Value validation and environment detection tool for Shell scripts. Validates input types (integers, floats, IPs), compares file ages, detects runtime environments (TTY, WSL, Termux, Cygwin). Supports batch checking with exit code 0 success / 1 failure. Trigger when user needs to validate input types, detect terminal environment, check file freshness, verify variable states, or perform environment suitability checks (suitable_pkg/suitable_advise). Keywords: validate, check, verify, is, integer, float, positive, negative, range, IP address, file age, interactive, WSL, Termux, environment detection, unset variable, batch check.

2026-03-27

flutter-dev

Flutter cross-platform development guide covering widget patterns, Riverpod/Bloc state management, GoRouter navigation, performance optimization, and platform-specific implementations. Includes const optimization, responsive layouts, testing strategies, and DevTools profiling. Use when: building Flutter apps, implementing state management (Riverpod/Bloc), setting up GoRouter navigation, creating custom widgets, optimizing performance, writing widget tests, cross-platform development.

2026-03-27

react-native-dev

React Native and Expo development guide covering components, styling, animations, navigation, state management, forms, networking, performance optimization, testing, native capabilities, and engineering (project structure, deployment, SDK upgrades, CI/CD). Use when: building React Native or Expo apps, implementing animations or native UI, managing state, fetching data, writing tests, optimizing performance, deploying to App Store/Play Store, setting up CI/CD, upgrading Expo SDK, or configuring Tailwind/NativeWind.

2026-03-27

View all from this repository

pysam

Source facts

Install options

Install with an AI assistant

Review the source files

More from this repository

Install with an AI assistant

More from this repository