xjtulyc/awesome-rosetta-skills

astropy-astronomy

Astronomical data analysis with astropy and astroquery — FITS I/O, WCS transforms, catalog cross-matching, aperture photometry, and CMB power spectra.

obspy-seismology

Seismological data analysis with ObsPy — FDSN waveform download, response removal, phase picking, moment tensor inversion, and seismicity mapping.

ocean-data

Download and analyze oceanographic data from Copernicus Marine Service and Argo floats using copernicusmarine, gsw, and xarray.

oral-history-tools

Use this Skill to process oral history recordings: Whisper transcription with timestamps, pyannote speaker diarization, OHMS metadata XML, and speaker anonymization.

learning-experiment

Educational psychology experiment design and analysis covering IRT, growth modeling, A/B testing, and learning curve estimation for research.

knowledge-graph-sparql

Knowledge graph construction, SPARQL querying, and entity linking for library and research data management using RDF and Wikidata.

openalx-bibliometrics

Bibliometric analysis using the OpenAlex API covering co-authorship networks, citation analysis, h-index, and research trend mapping.

patent-analysis

Patent landscape analysis with IPC classification, citation networks, technology emergence detection, and inventor collaboration mapping.

research-impact

Research impact measurement with altmetrics, citation normalization, field-weighted indicators, and journal ranking analysis for evaluation studies.

mixed-methods-research

Mixed methods research design with qualitative-quantitative integration, triangulation, content analysis, and systematic comparison using NVivo-style coding.

science-of-science

Science of science analysis covering disruption index, team size effects, sleeping beauty detection, and knowledge recombination with citation data.

text-mining-science

Scientific text mining with topic modeling, NER for scientific entities, claim extraction, and trend detection in research literature corpora.

containerization-research

Containerize research environments with Docker and Singularity for reproducible computation, HPC deployment, and research environment management.

data-version-control

Data version control with DVC covering pipeline tracking, remote storage, experiment comparison, and reproducible ML workflows for research.

python-package-dev

Python research package development with pyproject.toml, testing with pytest, documentation with Sphinx, and publishing to PyPI for academic software.

quarto-reporting

Reproducible research reporting with Quarto covering parameterized reports, multi-format output, inline computation, and journal article templates.

r-package-dev

R research package development with devtools, roxygen2 documentation, testthat testing, CRAN submission, and vignette creation for statistical methods.

grant-writing

Use this Skill to structure research grant proposals: NSF/NIH Specific Aims, budget justification, ERC narrative sections, structured abstracts, and biosketch formatting.

ml-for-research

Use this Skill to apply machine learning in research: scikit-learn pipelines, FLAML AutoML, SHAP explainability, nested cross-validation, and model cards.

preregistration-workflow

Use this Skill to preregister a study on OSF or AsPredicted, generate CONSORT/STROBE/PRISMA compliance checklists, and track deviations between the registered protocol and final analysis.

research-data-management

Use this Skill for research data lifecycle management: codebook generation, DVC versioning, anonymization (k-anonymity, pseudonymization), and README templates.

survey-design

Use this Skill to design, validate, and deploy research surveys: Likert scale construction, attention checks, pilot testing, ICC reliability, and Qualtrics/LimeSurvey export.

version-control-research

Use this Skill for research version control: Git workflow for analysis code, DVC data pipelines, GitHub Actions for reproducibility CI, and .env secrets management.

mayavi-3d-viz

Use this Skill for 3D scientific visualization with Mayavi: vector fields, isosurfaces, volume rendering, and animated 3D plots for physics data.

monte-carlo-physics

Use this Skill when simulating physical systems with Monte Carlo methods: statistical integration, MCMC sampling, Ising model, error estimation.

pytorch-physics

Physics-informed neural networks, neural ODEs, and data-driven force-field learning using PyTorch, DeepXDE, and torchdiffeq.

xarray-netcdf

Labeled multi-dimensional array analysis with xarray: NetCDF/HDF5 I/O, lazy Dask loading, rechunking, Zarr stores, and CF conventions.

chembl-bioactivity

Use this Skill to query ChEMBL for bioactivity data: target lookup, IC50/Ki retrieval, activity cliffs, SAR tables, and pChEMBL-normalized values.

mdanalysis-trajectory

Analyze molecular dynamics trajectories with MDAnalysis — RMSD, RMSF, hydrogen bonds, contact maps, and protein-ligand distances.

nmr-analysis

Process and analyze NMR spectra with nmrglue — FID processing, peak picking, chemical shift referencing, and J-coupling extraction.

openbabel-conversion

Use this Skill for chemical file format interconversion (SDF, SMILES, MOL2, PDB), 3D coordinate generation, conformer enumeration, and reaction SMARTS.

network-analysis-math

Use this Skill for graph construction, centrality measures (betweenness, PageRank), community detection (Louvain), and random graph models via networkx.

numerical-linear-algebra

Use this Skill for SVD, PCA, eigendecomposition, Cholesky, iterative solvers, sparse matrix formats, and condition number analysis with numpy and scipy.

topological-data-analysis

Apply persistent homology, Betti numbers, and mapper graphs to extract topological features from complex datasets.

air-quality-openaq

Use this Skill to access OpenAQ air quality data (PM2.5, O3, NO2), compute spatial interpolation, health exposure indices, and city comparisons.

climate-trends

Use this Skill for climate trend analysis: Mann-Kendall test, Sen's slope, extreme indices (RX1day, R10mm), percentile thresholds, IPCC-style figures.

gbif-biodiversity

Query GBIF occurrence data, apply spatial thinning, and build species distribution models using pygbif, geopandas, and elapid.

hydrology-pysheds

Use this Skill for DEM-based hydrological analysis: watershed delineation, flow direction/accumulation, stream networks, and runoff estimation with pysheds.

metpy-atmosphere

Atmospheric analysis with MetPy and Siphon: download NWP data from THREDDS/NOMADS, plot skew-T log-P diagrams, compute CAPE/CIN parcel metrics, and build synoptic composites.

obspy-seismology

Use this Skill for seismological analysis with ObsPy: waveform download, filtering, P/S phase picking, moment magnitude, and spectral analysis.