zhoy0409-debug/scholarflow-skills

polish-sci-figures

Use when a researcher needs scientific figures created, redrawn, arranged, audited, or exported with readable typography, high-contrast color, non-overlapping legends, and publication-ready files.

bioinformatics-workbench

Use when a researcher needs to turn a biological question and available sequencing or omics data into a realistic, reproducible bioinformatics workflow with explicit QC gates and deliverables.

journal-selection-advisor

Use when a researcher needs journal selection, manuscript-journal fit analysis, tiered recommendations, JCR or CAS target matching, institutional requirement checks, publication-risk calibration, or submission sequencing.

journal-submission-normalizer

Use when a researcher needs a manuscript checked and normalized against a target journal's official submission and formatting requirements, with a compliance report before submission.

research-integrity-guardrail

Use when a researcher needs manuscripts, reports, or study materials audited for unsupported claims, inconsistent numbers, citation gaps, reproducibility omissions, or overstatement.

scholarflow-citation-review

Use when a researcher needs citations or a reference list audited for source verification, metadata consistency, journal style, or evidence-to-claim alignment.

scholarflow-delivery-qa

Use when a researcher needs external files staged safely, fragile paths normalized, local toolchain readiness checked, or deliverables rendered and verified before handoff.

scholarflow-experiment-log

Use when a researcher needs raw experiment notes, images, voice-derived notes, or observations converted into structured logs with metadata, anomaly tracking, and follow-up actions.

scholarflow-literature-monitor

Use when a researcher needs a bounded, repeatable literature-monitoring workflow with explicit sources, screening rules, delivery format, and review cadence.

scholarflow-literature-search

Use when a researcher needs a traceable academic literature search, evidence screening, citation verification, or a reproducible search strategy.

scholarflow-manuscript-studio

Use when a researcher needs an end-to-end manuscript workflow, from materials or an existing draft through evidence planning, revision, translation, formatting, and final integrity review.

scholarflow-pdf-qa

Use when tasks involve reading, creating, or reviewing PDF files where rendering and layout matter; prefer visual checks by rendering pages (Poppler) and use Python tools such as `reportlab`, `pdfplumber`, and `pypdf` for generation and extraction.

scholarflow-proposal-writer

Use when a researcher needs a research proposal built or revised with a clear background, gap, aims, methods, feasibility, outcomes, risks, timeline, and evaluation criteria.

scholarflow-report-pdf

Use when a researcher needs Markdown files with Mermaid diagrams converted to PDF using local tools (mmdc, md-to-pdf, Puppeteer) with CSS styling and page numbers. Use when the user asks to export markdown to PDF, render Mermaid charts to PDF, or convert a…

scholarflow-research-slides

Use when a researcher needs one self-contained presentation slide designed, drafted, or revised as editable HTML with a documented visual specification.

scholarflow-review-response

Use when a researcher needs reviewer responses, rebuttals, revision plans, or response tables drafted and audited with evidence-backed replies and clear manuscript-change mapping.