bio-compressed-files

Read and write compressed sequence files (gzip, bzip2, BGZF) using Biopython. Use when working with .gz or .bz2 sequence files. Use BGZF for indexable compressed files.

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Repository: zja2004/BGI-CLI
Last source activity: March 19, 2026 at 08:17
Detected SKILL.md language: English
Stars: 2
Forks: 0

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Follow https://skillsmp.com/skill-install/prompt.md to install only the Agent Skill at https://github.com/zja2004/BGI-CLI/tree/main/data/skills/bio-compressed-files.

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npx skills add https://github.com/zja2004/BGI-CLI --skill bio-compressed-files

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SKILL.md

Source instructions · Read-only preview

name	bio-compressed-files
description	Read and write compressed sequence files (gzip, bzip2, BGZF) using Biopython. Use when working with .gz or .bz2 sequence files. Use BGZF for indexable compressed files.

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recursive-decomposition

Based on the Recursive Language Models (RLM) research by Zhang, Kraska, and Khattab (2025), this skill provides strategies for handling tasks that exceed comfortable context limits through programmatic decomposition and recursive self-invocation. Triggers on phrases like "analyze all files", "process this large document", "aggregate information from", "search across the codebase", or tasks involving 10+ files or 50k+ tokens.

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This skill should be used when the user asks to "design agent tools", "create tool descriptions", "reduce tool complexity", "implement MCP tools", or mentions tool consolidation, architectural reduction, tool naming conventions, or agent-tool interfaces.

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project-development

This skill should be used when the user asks to "start an LLM project", "design batch pipeline", "evaluate task-model fit", "structure agent project", or mentions pipeline architecture, agent-assisted development, cost estimation, or choosing between LLM and traditional approaches.

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bio-compressed-files

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