bioclaw-scrna-preprocessing-clustering

name	bioclaw-scrna-preprocessing-clustering
description	Standard scRNA-seq preprocessing and clustering with Scanpy: QC, filtering, normalization, HVG selection, PCA, neighbors, UMAP, and Leiden clustering, producing an analysis-ready AnnData object.
domain	single-cell
primary_tool	scanpy
methods	["scanpy","anndata","leiden","umap","pca"]
macro_tags	["single-cell","scrna-seq","preprocessing","clustering","dimensionality-reduction","workflow"]
micro_tags	["scanpy","anndata","leiden","umap","pca","data-io","var-names","qc","qc-metrics","violin-plot","filtering","doublet-removal","thresholds","normalization","log1p","highly-variable-genes","scaling","neighbors","clustering","export","h5ad","qc-report"]
source	bioclaw/scrna-preprocessing-clustering
status	active
enabled	true

Bioclaw Scrna Preprocessing Clustering