literature-research

name	literature-research
description	Search academic literature and perform deep research reviews. Use when user asks to search PubMed, find academic papers, or do literature reviews.

Literature Research

Goal

Search academic databases and perform comprehensive literature reviews.

Scripts

• ./scripts/pubmed_literature_search.py - Search PubMed
• ./scripts/literature_deep_review.py - Deep review with Claude

Usage

Search PubMed

python3 ./scripts/pubmed_literature_search.py \
  --query "machine learning cancer diagnosis" \
  --limit 50 \
  --output .tmp/papers.json

Deep Review

python3 ./scripts/literature_deep_review.py \
  --input .tmp/papers.json \
  --output .tmp/review.md

Output

• JSON file with paper metadata
• Markdown review with key findings, themes, gaps

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Schema

Inputs

Name	Type	Required	Description
query	string	Yes	Research query (e.g., 'machine learning cancer diagnosis')
limit	integer	No	Max papers to fetch (default: 50)

Outputs

Name	Type	Description
papers_file	file_path	JSON file with paper metadata
review_file	file_path	Markdown review with key findings, themes, gaps

Credentials

Name	Source
ANTHROPIC_API_KEY	.env

Cost

Free (PubMed API) + Claude for review