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Look up gene description and location via NCBI Gene (esearch/efetch).
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Basierend auf der SOC-Berufsklassifikation
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
| name | ncbi_gene_lookup |
| description | Look up gene description and location via NCBI Gene (esearch/efetch). |
| category | bio/literature |
| version | 1 |
| requires_tools | ["fetch_url"] |
| requires_network | true |
| user_invocable | true |
| species | any |
| modality | literature |
| stage | utilities |
| stability | experimental |
| safety_level | low |
User asks for gene info (symbol, description, chromosome, organism) from NCBI.
Search: fetch_url to esearch.fcgi db=gene, term="{gene}[sym]", retmode=json. Get id list.
Fetch: efetch.fcgi db=gene id={id} retmode=xml or json. Parse description, chromosome, organism, type (protein-coding etc.).
Present: Gene symbol, official name, description, organism, chromosome/position, and link to NCBI Gene.
