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Search PubMed for articles by query; return top N PMIDs with titles, year, journal, and link.
Mit Codex oder Claude installieren Kopieren Sie diesen Prompt, fügen Sie ihn in Codex, Claude oder einen anderen Assistant ein und lassen Sie die Skill-Seite prüfen und installieren.
Basierend auf der SOC-Berufsklassifikation
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
| name | pubmed_search |
| description | Search PubMed for articles by query; return top N PMIDs with titles, year, journal, and link. |
| category | bio/literature |
| version | 1 |
| requires_tools | ["fetch_url"] |
| requires_network | true |
| user_invocable | true |
| species | any |
| modality | literature |
| stage | utilities |
| stability | experimental |
| safety_level | low |
User asks for literature search, papers on a topic, or "find papers about X".
Build URL: NCBI E-utilities esearch:
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term={query}&retmax={max_results}&retmode=jsonFetch: Use fetch_url with the constructed URL.
Parse: From JSON response, extract idlist (PMIDs) and optionally run efetch for titles/summaries, or use esummary:
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&id={comma-separated PMIDs}&retmode=jsonPresent: For each article, show PMID, title, year, journal, and link https://pubmed.ncbi.nlm.nih.gov/{PMID}/.