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Parse common pipeline log/output and summarize metrics and status.
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Basierend auf der SOC-Berufsklassifikation
Manage the BioAPEX current-feature workflow from scoping through review and completion
Turn an analysis request into a Slurm-ready execution plan with commands, resource assumptions, and job structure.
Scale a buffer recipe to a target volume and compute component masses/volumes.
Save a fetched summary or document to the knowledge base for later retrieval (e.g. after PubMed/UniProt lookup).
Interpret scRNA clusters using marker genes and suggest cell type or state.
Critically evaluate a perturbation hypothesis — challenge assumptions, propose negative controls, and flag confounders.
| name | results_summarizer |
| description | Parse common pipeline log/output and summarize metrics and status. |
| category | bio/compute |
| version | 1 |
| requires_tools | ["read_file","python_repl"] |
| requires_network | false |
| user_invocable | true |
| species | any |
| modality | compute |
| stage | reporting |
| stability | experimental |
| safety_level | low |
User has a log file or pipeline output and wants a short summary of metrics, errors, or completion status.
Read: Use read_file to load the file (or first/last N lines if very large).
Parse: Look for common patterns:
Summarize: State: success/failure, key metrics if found, any errors, and suggested next step if failed.
