brainx-install

name	brainx-install
description	Gently check whether the BrainX meta-package is installed in the intended Python environment; if it is absent, open this skill. use this skill to install, set up, upgrade, downgrade, pin, migrate, uninstall, or clean up BrainX.

BrainX Install

Objective

Install or remove BrainX in one confirmed Python virtual environment, verify, then report the result. For installation, treat each published BrainX release as an indivisible compatibility set; never assemble independently selected subpackage versions.

Request Routing

For an uninstall, removal, or BrainX package-cleanup request, open references/uninstall-and-cleanup.md and stop here. Follow that reference in full; do not apply the installation workflow's device or release selection.

For installation, upgrade, downgrade, migration, device-target, or compatibility requests, continue with the workflow below.

Core Rules

1. BrainX package must use a Python interpreter at version >=3.11.
2. For a clean environment with no requested version, prefer to use the unpinned BrainX install matching the confirmed device, but resolve and name the current latest Python-compatible BrainX date-style release before confirmation. Critically, if a BrainX component already exists in the environment, or a requested version is specified, you must open compatibility-and-release-matching.md, use it as the primary release source, and select one non-separated release. Never mix component versions from different rows.
3. Require the user to explicitly choose cpu, cuda12, cuda13, or tpu. Detection is evidence, not consent.
4. Before any mutation, must present the complete specification to the user clearly, show the run location, interpreter, venv path, device extra, release, complete component set, existing packages, expected results, and exact commands.
5. Create or modify nothing until the user confirms that complete specification.
6. After confirmation, install only the selected BrainX meta-package release. Do not install ecosystem components individually.

Workflow

Follow this order without skipping the confirmation gate:

read-only inspection
-> explicit device choice
-> coherent release selection
-> complete installation specification
-> explicit user confirmation
-> venv creation or reuse
-> pip 23+ upgrade
-> one confirmed BrainX install
-> BrainX/JAX import and device verification
-> final report

1. Read-Only Inspection

Record the intended run location first. Perform no package installation, or environment creation during inspection.

Choose read-only inspection methods that fit the operating system.

Collect enough evidence to identify:

• OS, version, architecture, and CPU;
• visible NVIDIA or TPU hardware and the driver, toolkit, container, or runtime evidence needed to distinguish cuda12, cuda13, and tpu;
• the active Python executable and version, environment-manager state, pip version, and viable candidate interpreters;
• existing .venv, .venv-brainx, or user-designated target environments without creating or activating them;
• installed versions of BrainX, BrainUnit, BrainState, BrainEvent, BrainTools, BrainTrace or BrainScale, BrainCell, BrainPy, BrainPy-State, BrainMass, PINNx, JAX, JAXlib, and Optax in every environment relevant to the request;
• for a clean unpinned install, the exact latest BrainX release compatible with the proposed interpreter, resolved from read-only official package-index metadata.

Prefer package metadata and platform-native tools over imports or newly installed helpers. Record missing evidence explicitly as unknown, not_detected, or a command error rather than guessing. Organize the result in whatever concise structured form best fits the task.

2. Confirm the Device Target

Determine whether the intended installation is for:

• cpu
• cuda12
• cuda13
• tpu

Do not treat detected hardware as the user's choice. If the target is unstated, implied, contradictory, or unclear, question the user directly and persistently until they explicitly choose one device target.

Reflect the understood requirement back to the user before release selection. Use wording such as:

Understanding your need: you want to install BrainX for NVIDIA CUDA 12 on the target environment you identified, using the cuda12 extra. Is that correct?

Replace the example values with the user's actual target. If evidence is uncertain, explain the ambiguity and ask a focused question instead of filling in a likely answer. Recommend cpu when accelerator support is absent or uncertain, but still require explicit confirmation. Do not proceed until the user confirms or corrects the reflected device target.

3. Select One Release

First case, When no BrainX meta-package or ecosystem component is installed and the user has not requested a specific version, do not open the compatibility reference. Use read-only official package-index metadata with the proposed interpreter to identify the exact latest Python-compatible BrainX release, then report it in the form latest (vYYYY.M.D). For example, report latest (v2026.7.9) when 2026.7.9 is the verified current release.

Critically, for the second case, when BrainX packages are already installed or the user requests a specific pinned version, you must open compatibility-and-release-matching.md before selecting a release, then apply the matching procedure below.

• With one exact component match, choose the newest row containing that exact version.
• When one BrainX ecosystem component is installed and its version does not appear in any compatibility matrix row, compare it with the versions declared for that same component across all rows. Choose the BrainX release containing the closest semantic version, favor the newer BrainX release if two rows are equally close, propose installing that entire BrainX release rather than the component alone, and disclose the component version change.
• With multiple installed components that do not identify one coherent row, show the competing candidate rows and require the user to choose. Do not construct a compromise tuple.
• Treat an installed BrainX meta-package version as the release anchor, but surface any component drift from its row.
• Do not use JAX or Optax alone as a legacy release anchor unless the user explicitly asks to preserve it.

4. Choose the Venv

Prefer reusing an existing relevant Python virtual environment whose interpreter is Python >=3.11. This includes environments managed by venv, Conda, or another environment manager; inspect the environment before proposing reuse.

• If no suitable existing environment is available, propose creating a fresh virtual environment.
• Never delete, rebuild, overwrite, or silently repurpose an existing environment.
• Never install into the global interpreter or an unrelated environment.

Resolve the exact interpreter inside the proposed environment using the conventions of the confirmed platform and environment manager. Do not rely on shell activation or assume that a bare python or pip command targets the intended environment.

5. Present the Complete Specification

The agent must report the complete proposed setup before any mutation. This is a mandatory reporting contract, not a rigid implementation script. Use concrete values and preserve the following visible structure:

Confirming the setup:

Python environment
- Run location:
- Python version:
- Virtual-environment path:
- Environment action: create or reuse

Device target
- Intended execution environment:
- Detected hardware evidence:
- User-confirmed target: CPU, NVIDIA CUDA 12, NVIDIA CUDA 13, or TPU
- Selected BrainX extra: cpu, cuda12, cuda13, or tpu

BrainX target package state
- Current BrainX ecosystem packages and versions:
- Target BrainX release: latest or selected, with the explicit date-style release (`vYYYY.M.D`)
- Expected final package set after installation, using exact pins or declared constraints

Planned changes
- Packages that will be installed, upgraded, or downgraded:
- Exact commands that will run:
Please confirm the entire setup or correct it.

For an existing-package or pinned-version workflow, list the BrainX meta-package and every component declared by the selected compatibility row under Expected final package set, using the exact target version or constraint. For a clean unpinned install, name the device-specific meta-package and verified release explicitly under Target BrainX release and Expected final package set, for example BrainX[cpu]: latest (v2026.7.9).

End by asking the user to confirm the entire setup or correct it, and state explicitly that no environment will be created or modified before confirmation.

Do not combine specification and installation in one turn unless the user has already confirmed this exact environment, release, and device extra.

6. Install and Verify

Use exactly the confirmed venv, interpreter, device extra, and unpinned or pinned release method.

1. Create or reuse the confirmed venv.
2. Upgrade pip to version 23 or newer.
3. Install the BrainX meta-package. Never install BrainX components separately.

If any confirmed choice must change, stop, present a corrected specification, and obtain new approval.

If pip fails, stop and skip verification. Leave the failed environment intact for diagnosis.

After pip succeeds, verify the installation with this simple command:

python -c "import BrainX, jax; print('BrainX OK'); print('JAX devices:', jax.devices())"

Run it through the exact confirmed venv interpreter; the bare python spelling is illustrative.

Verification passes only when:

• both BrainX and jax import successfully;
• the command prints BrainX OK;
• jax.devices() reports the user-confirmed backend: CPU for cpu, a CUDA device for cuda12 or cuda13, or a TPU device for tpu.

Do not modify manifests, lockfiles, requirements files, or unrelated environments.

7. Report and Post-install handoff

Report:

• environment path;
• resolved BrainX release and device extra;
• pip command and result;
• verification command output;
• final status: PASS or FAIL, with the reason.

After reporting a PASS, explicitly tell the user:

This session is for installation of the BrainX package. Installation is complete; Please open another codex chat so that the context is clean

Official Commands to use

Use these official BrainX documentation examples to understand the supported syntax. They are educational patterns, not a rigid workflow or permission to bypass the confirmed interpreter, venv, release behavior, or device choice.

Quick Install and Dependency Resolution

When no BrainX meta-package or ecosystem component is already installed, prefer the official unpinned quick-install family:

pip install -U BrainX

For a new BrainX environment when user has no existing brainX packages, the bare command and the unpinned BrainX[cpu], BrainX[cuda12], BrainX[cuda13], and BrainX[tpu] commands are equally default; choose the one matching the user-confirmed device target. These are the cleanest installation methods because they let pip choose the latest BrainX release compatible with the confirmed Python version and resolve only the dependency changes that release requires. Use an exact release pin only when the user has existing brainX packages, or requests a specific release, reproducibility, or compatibility with an existing BrainX environment.

Command	BrainX itself	Dependencies
pip install -U BrainX	Replaced with the latest Python-compatible BrainX version if a different version is installed	Replaced only when needed to satisfy that BrainX release's constraints
pip install -U 'BrainX[cuda12]'	Same as above	Same, plus CUDA 12 JAX dependencies
pip install 'BrainX==2025.9.15'	Upgraded or downgraded to exactly 2025.9.15 if another version is installed	Replaced only when their installed versions do not satisfy 2025.9.15's requirements

Hardware-Specific Installs

For a clean environment, each unpinned command below is the default for its corresponding confirmed target. Choose the extra that matches the platform and CUDA toolchain:

# CPU only
pip install -U BrainX[cpu]

# NVIDIA GPU (CUDA 12.x)
pip install -U BrainX[cuda12]

# NVIDIA GPU (CUDA 13.x)
pip install -U BrainX[cuda13]

# TPU
pip install -U BrainX[tpu]

Pin a Specific BrainX Release

BrainX releases use date-style versions:

pip install BrainX==2025.9.15

When an exact release is requested, preserve the confirmed hardware extra while applying the selected BrainX release pin.

Reference Routing

Open references/uninstall-and-cleanup.md for any request to uninstall, remove, or clean up BrainX packages. Use its exact package scopes and mandatory uninstall specification; do not use the compatibility matrix to narrow the cleanup set.

Open references/compatibility-and-release-matching.md when the target environment already contains BrainX or BrainX ecosystem packages, or when the user requests a specific pinned BrainX version. This reference is mandatory for that second case and must be read before release selection. Use its matrix to match existing packages, reconcile version drift, evaluate pinned-version compatibility, and select one coherent BrainX release with its declared component versions.

Do not open this reference for a clean installation when no BrainX packages are present and no specific version is requested; use the unpinned quick-install path instead.