| name | bioinfo-sdd-evidence-section |
| description | Create or revise Bioinfo-skills analysis section evidence reports. |
| compatibility | Bioinfo-skills section SDD; Linux/Codex |
| metadata | {"author":"bioinfo-skills","source":"SPEC/bioinfo_native_section_sdd_plan.md"} |
Bioinfo SDD Evidence Section
Use this skill when creating or revising evidence.md for a Bioinfo-skills
analysis section.
Workflow
- Confirm
task_review is approved.
- Run the deterministic workflow:
PYTHONPATH=src python -m bioinfo_sdd run-workflow <section_id> --run-id <run_id>.
- Inspect
runs/<run_id>/state.json, log.jsonl, and checks/*.json.
- Record pass, fail, and skip results explicitly. Skips must name the missing
package or unavailable capability.
- Link evidence to actual
pack_refs, workflow_ref, task_refs,
active installed-ref revision, source bundle IDs, package_refs,
tool_refs, wrapper, adapter, and check IDs.
- Treat the evidence/report gate as
evidence_acceptance: evidence may be
drafted before approval, but accepted claims remain pending until the gate is
approved.
- Keep claims within
section.yml claims.allowed; repeat forbidden claims as
caveats when relevant.
- Stop at
evidence_acceptance unless it is already approved.
Evidence is not biological interpretation. It is a review record for whether
the declared section ran or validated under the declared constraints.