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Create or revise Bioinfo-skills analysis section implementation plans.
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Basierend auf der SOC-Berufsklassifikation
Perform a non-destructive cross-artifact consistency and quality analysis across spec.md, plan.md, and tasks.md after task generation.
Generate a custom checklist for the current feature based on user requirements.
Identify underspecified areas in the current feature spec by asking up to 5 highly targeted clarification questions and encoding answers back into the spec.
Create or update the project constitution from interactive or provided principle inputs, ensuring all dependent templates stay in sync.
Create or refresh a current-understanding.md continuity report for a Bioinfo SDD feature or half-finished workflow by reviewing current specs, plans, tasks, section state, installed refs, selected packages/tools, wrappers, adapters, checks, evidence, and unresolved next steps.
Auto-commit changes after a BioKit command completes
| name | bioinfo-sdd-plan-section |
| description | Create or revise Bioinfo-skills analysis section implementation plans. |
| compatibility | Bioinfo-skills section SDD; Linux/Codex |
| metadata | {"author":"bioinfo-skills","source":"SPEC/bioinfo_native_section_sdd_plan.md"} |
Use this skill when creating or revising plan.md for a Bioinfo-skills
analysis section.
spec_review is approved.pack_refs, workflow_ref, task_refs,
package_refs, tool_refs, wrapper, adapter, and check_refs.sdd/packs/*/pack.yml.bioinfo-sdd market-list --task-ref <task_id> and
bioinfo-sdd market-show <bundle_id> before selecting concrete tools.bioinfo-sdd install-tool-bundle <section_id> <bundle_id> or replace it with bioinfo-sdd replace-tool-bundle.bioinfo_tool as the active Bioinfo package/tool context only after
the selected tool_market/ bundle has been installed into section-local
installed_refs/.tool_market/ as active planning context.PYTHONPATH=src python -m bioinfo_sdd run-check market_manifest,
PYTHONPATH=src python -m bioinfo_sdd run-check installed_refs --section <section_id>, and
PYTHONPATH=src python -m bioinfo_sdd run-check section_catalog_links --section <section_id>.plan_review unless it is already approved.The plan should be replaceable: make it clear which choices come from the task template and which are section-local overrides.