epigen

Use when the user needs to work with single-cell RNA-seq data using CellWhisperer: processing datasets for the interactive web app, scoring/annotating cells' types and states with free-text queries, or loading CellWhisperer as a Python library for local inference. Triggers on: "cellwhisperer", "cell type annotation", "scRNA-seq analysis", "single-cell scoring", "cellxgene", or any request involving transcriptome-to-text similarity scoring (e.g. when the user asks for specific attributes/properties of cells, including their type and state).