benchos-plasmidsaurus

name	benchos-plasmidsaurus
description	List Plasmidsaurus sequencing jobs, inspect item details, and download results or reads into the BenchOS workspace. Use when the user asks to check sequencing status, fetch sequencing outputs, or pull Plasmidsaurus data into BenchOS.
license	Proprietary
compatibility	Requires BenchOS agent runtime with `labbook_cli`, `benchos-cli`, and server-side Plasmidsaurus credentials.
metadata	{"author":"benchos","version":"1"}
allowed-tools	labbook_cli

BenchOS Plasmidsaurus

Use this skill when the user wants sequencing data from Plasmidsaurus.

Quick Rules

• Use list to discover recent items, then info for a specific code.
• Use download when the user wants results written into /workspace.
• BenchOS currently saves the downloaded archives as zip files in the workspace; unzip later only if the user needs the extracted contents.

Command Patterns

List items

{"args":["plasmidsaurus","list","--status","complete"]}

Inspect one item

{"args":["plasmidsaurus","info","8WGZXW"]}

Download reads and results

{"args":["plasmidsaurus","download","8WGZXW","--output","downloads/plasmidsaurus","--results","true","--reads","true"]}