benchos-protparam

name	benchos-protparam
description	Calculate protein parameters such as molecular weight, pI, extinction coefficient, and basic purification recommendations. Use when the user asks about protein properties or planning purification from sequence.
license	Proprietary
compatibility	Requires BenchOS agent runtime with `labbook_cli`, `benchos-cli`, and the curated `python-basic` capability pack.
metadata	{"author":"benchos","version":"1"}
allowed-tools	labbook_cli

BenchOS ProtParam

Use this skill when the user wants protein biophysical parameters from an amino acid sequence.

Quick Rules

• Install python-basic before running the script.
• Accept amino acid sequences only.
• Use --purification when the user also wants a simple purification plan.

Command Patterns

Basic analysis

{"args":["capabilities","install","--name","python-basic"]}

{"args":["exec","--capability","python-basic","--cwd",".","--","/opt/benchos/shared-skills/benchos-protparam/scripts/protparam_cli.py","--sequence","MKTAYIAKQRQISFVKSHFSRQDILD","--json"]}

Include purification recommendations

{"args":["exec","--capability","python-basic","--cwd",".","--","/opt/benchos/shared-skills/benchos-protparam/scripts/protparam_cli.py","--sequence","MKTAYIAKQRQISFVKSHFSRQDILD","--purification","--json"]}