simple-main-ctf

name	simple-main-ctf
description	Use when working in SIMPLE's src/main/ctf subsystem, including microscope contrast transfer function models, anisotropic/patched CTF estimation, fitting cost functions, and iterative estimation workflows.

SIMPLE src/main/ctf

This folder owns CTF modeling and estimation.

Read First

• simple_ctf.f90
• simple_ctf_estimate_cost.f90
• simple_ctf_estimate_fit.f90
• simple_ctf_estimate_iter.f90

Connections

• Preprocessing and motion-correction workflows often feed or consume CTF results
• image/, motion/, project/, and exec/commanders are common neighboring folders

Working Rule

Separate the microscope model from estimation-loop policy when making changes; many bugs come from blending those concerns.