Run an independent AI review of a project or research plan. Use when you want feedback without the full /submit checklist.
Approve a project and upload it to the lakehouse. Use when the author is ready to stand behind the report and submit the project for archival.
Read analysis outputs, compare against literature, and draft findings for a project REPORT.md. Use when notebooks have been run and the user wants to interpret results and write up findings.
Get started with the BERIL Research Observatory. Use when a user is new, wants orientation, or asks what they can do.
Run arbitrary scripts on KBase compute nodes via the CDM Task Service (CTS). Use when the user needs to move compute off their notebook or local machine — e.g., running bioinformatics tools, heavy data processing, or anything that benefits from dedicated CPU/memory on a remote node.
Use when searching BERIL project/docs context through OpenViking or refreshing the indexed context layer before research, synthesis, or pitfall work.
Search and review biological literature using MCP tools (PubMed, arXiv, bioRxiv, Google Scholar) with full-text reading, citation snowballing, and PaperBLAST integration. Use when the user wants to find papers, review existing research on a topic, check what's known about an organism or pathway, or support a hypothesis with citations.
Structural biology workflow orchestrator using the Phenix suite. Use when the user wants to determine, refine, or validate protein structures — including AlphaFold structure retrieval, X-ray crystallography, cryo-EM, MolProbity validation, or visualization script generation.