panel-interaction-balancing

name	panel-interaction-balancing
description	Use when an agent must split tNGS or multiplex primer pairs into pools while minimizing primer-primer interaction risk and reporting pool overflows.

Panel Interaction Balancing

Use this after tngs-panel-design and before wet-lab export. The helper builds a simple interaction graph from cross-primer complement runs and greedily assigns pools.

python agentskill/scripts/primer_panel_qc.py assign-pools \
  --panel-json panel_plan.json \
  --max-pools 2 \
  --max-cross-complement-run 8 \
  --output pooled_panel.json \
  --csv-output pooled_panel.csv

Review:

• interaction_edge_count;
• interactions;
• overflow_pair_ids;
• whether odd/even tiling pools are preferable for the platform.

If overflow occurs, redesign or increase pool count before ordering.