Compile raw sources into detailed, Obsidian-compatible, interlinked Markdown pages under wiki/ references/ and concepts/.
Deduplicates concepts, splits overly broad concepts, and synthesizes multi-source concept definitions by dynamically searching and analyzing all papers that reference them.
Ingest new academic papers or PDFs into the raw/ folder of your active topic wiki using the local OCR model configured in config.yaml.
Ingest new academic papers, notes, or web articles into the raw/ folder of your active topic wiki.
Initialize a new topic workspace folder with standard raw/, wiki/, inbox/, and output/ directories.
Statically check and repair double-bracket linkages and frontmatter within your compiled wiki directory.
Automatically builds semantic links between concept markdown files by calculating vector similarity using a local Ollama embedding model.
Act as a Concept Miner to inspect compiled papers, check concept linkage density, and spawn subagents to extract missing mathematical and physical concepts.