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SkillsMP hat 483 Skills aus mkurman/zorai gesammelt. Öffne einen Skill, um Quelle und Details zu prüfen.
mkurman/zoraiEs werden 40 von 483 gesammelten Skills angezeigt.
Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs). Use when the user wants to run cell-free protein expression (validation or…
Quellsprache: Englisch
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine…
Quellsprache: Englisch
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best for simple pipelines, dataset preparation, quick tile-based analysis. For advanced spatial…
Quellsprache: Englisch
Configuration framework for complex applications (Hydra). Dynamic hierarchical configuration by composition and override via CLI, YAML, and structured configs. Use for ML experiment management, multi-environment deployment, hyperparameter sweeps, and…
Quellsprache: Englisch
Pythonic config generation for Hydra (hydra-zen). Eliminates hand-written YAML by generating structured dataclass configs directly from Python objects and functions. Provides make_config, builds, zen, store, and launch utilities for configurable,…
Quellsprache: Englisch
Automated LLM-driven hypothesis generation and testing on tabular datasets. Use when you want to systematically explore hypotheses about patterns in empirical data (e.g., deception detection, content analysis). Combines literature insights with data-driven…
Quellsprache: Englisch
Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses with predictions, propose mechanisms, and design experiments to test them. Follows scientific method framework.…
Quellsprache: Englisch
IEC 62304 medical device software lifecycle framework. Risk classification, software safety classification (A/B/C), design control, verification, validation, and regulatory documentation for FDA/EU MDR submissions.
Quellsprache: Englisch
Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap analysis of existing documentation, (2) creating…
Quellsprache: Englisch
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
Quellsprache: Englisch
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking…
Quellsprache: Englisch
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
Quellsprache: Englisch
Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral…
Quellsprache: Englisch
MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing. Use when writing MATLAB/Octave scripts for linear algebra, signal processing, image processing, differential equations, optimization,…
Quellsprache: Englisch
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots…
Quellsprache: Englisch
Medical Concept Annotation Toolkit. Trainable NLP for extracting clinical concepts from unstructured text. Supports ICD-10, SNOMED CT, RxNorm, UMLS. Active learning for custom medical ontologies.
Quellsprache: Englisch
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
Quellsprache: Englisch
M&A deal modeling: accretion/dilution analysis, LBO models, DCF valuation, comparable company analysis, precedent transactions, and synergy estimation. Full three-statement merger models.
Quellsprache: Englisch
MIMIC (Medical Information Mart for Intensive Care) database toolkit. Curated ICU data: vitals, labs, medications, notes, diagnoses. Tools for querying MIMIC-III/IV, building ML features, and reproducing benchmarks.
Quellsprache: Englisch
Medical Open Network for AI (MONAI). Framework for deep learning in medical imaging: segmentation, classification, detection, registration. Supports DICOM, NIfTI, PNG. Built on PyTorch with GPU acceleration.
Quellsprache: Englisch
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality,…
Quellsprache: Englisch
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle…
Quellsprache: Englisch
Read and write neuroimaging file formats: NIfTI, GIFTI, CIFTI, MGH, Minc, Analyze, SPM. Core I/O for fMRI, diffusion MRI, structural MRI pipelines. Use when handling brain imaging data.
Quellsprache: Englisch
No New U-Net — self-configuring framework for medical image segmentation. Automatically adapts to any dataset. Top performer on biomedical segmentation benchmarks (BraTS, KiTS, etc.).
Quellsprache: Englisch
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
Quellsprache: Englisch
OHDSI (Observational Health Data Sciences and Informatics) OMOP Common Data Model. Tools for converting EHR data to OMOP CDM, running cohort analyses, and population-level estimation. Standard for observational research.
Quellsprache: Englisch
Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons hardware with full access to Protocol API v2 features. Best for production Opentrons protocols, official API compatibility. For multi-vendor…
Quellsprache: Englisch
Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model training on pathology data. Supports 160+ slide formats. For…
Quellsprache: Englisch
Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compliance (CONSORT/STROBE), and constructive feedback. Best for…
Quellsprache: Englisch
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms…
Quellsprache: Englisch
Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This skill should be used when conducting web searches for current information, finding recent scientific literature, getting grounded answers with…
Quellsprache: Englisch
High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for BED/VCF/BAM/GFF intervals. Streaming, cloud-native, faster bioframe alternative.
Quellsprache: Englisch
Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, diseases, phenotypes, and more.
Quellsprache: Englisch
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize…
Quellsprache: Englisch
High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel training, vectorized environments, multi-agent systems, or integration with game environments (Atari, Procgen, NetHack). Achieves 2-10x speedups…
Quellsprache: Englisch
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
Quellsprache: Englisch
Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical imaging data in DICOM format, extracting pixel data from medical images (CT, MRI, X-ray, ultrasound),…
Quellsprache: Englisch
Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug…
Quellsprache: Englisch
Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons, plate readers, pumps) or needing unified programming across different vendors. Best for complex workflows, multi-vendor setups, simulation.…
Quellsprache: Englisch
Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project integration, format conversion, for computational materials science.
Quellsprache: Englisch