reference-manager

Manage academic references in CSL-JSON format. Add papers by DOI/PMID/ISBN/arXiv, search and list references, generate citations, manage full-text PDFs, and check for retractions.

Analyzes ROADMAP and implements tasks in parallel with automatic orchestration. Use when starting implementation work.

Reviews a GitHub PR by checking CI status, running tests, and posting review. Always reports findings to user. Use when reviewing PRs or when the user says "review PR".

Cleans up completed phases in ROADMAP, moving relevant info to CHANGELOG or specs.

Implements a task locally (without worktree) following TDD with IPC status reporting. Use when working on a task in an existing branch.

Implements a task from spec/tasks in a git worktree following TDD. Use when working on a specific task by keyword.

Detects PRs with changes requested and spawns fixer agents. Use when addressing review feedback.

Merges a PR with automatic cleanup of worktree and branch. Handles all edge cases. Use when merging approved PRs.

Responds to PR comments and review feedback. Use when addressing specific comments on a PR.

Reviews and updates README for researchers. Use when documentation needs revision.

Reviews a PR from the main repository (without worktree). Use when reviewing PRs from the main branch.

Shows current project status including tasks, tests, and worktrees. Use when checking project health.

Reviews and updates specification documents. Use when specs need revision.