reading-pipeline

name	reading-pipeline
version	1.0.0
description	Universal 5-layer book distillation skill — turn books, long PDFs, EPUBs, AZW3/MOBI, or research papers into compounding knowledge instead of one-off summaries. Use when user asks to: distill / read / digest / analyze / unpack / break down a book; build a reading note; turn a book into a skill (book2skill); create cross-book synthesis with explicit Convergence + Divergence; do RQ-driven deep reading; add a new book to an existing topic cluster; produce an Obsidian-compatible reading-note with citations; or asks in Chinese 拆解 / 蒸馏 / 深读 / 拆书 / 求同存异 / 知识编排 / 跨书综合 / 书做成skill / 多本书合并 / book2skill / 概念聚合 / 读书拆解 / 长文蒸馏. Compatible with Codex, Hermes, Claude Code, and any agent reading SKILL.md frontmatter. Not for casual summaries — every output must promote to L3/L4 or be explicitly archive_only.
metadata	{"requires":{"config":"config.yaml","optional_bins":["docling","pandoc","pdftotext"],"optional_skills":["docling","book-collector","ebook-finder","pdf"]},"supersedes":["reading-knowledge-compiler","deep-reading-domain-memory"],"produces":["L2 reading-note (Markdown with frontmatter)","L3 wiki-concept page (Markdown with frontmatter, multi-source aware)","L3.5 cross-book-synthesis (topic-map Markdown)","L4 skill body (SKILL.md + references/) plus Obsidian pointer card"],"artifacts_outside_vault":["${SCRATCH_PATH}/<project>/*.txt + *-headings.md + index.json (L0)","${SCRATCH_PATH}/<project>/<book>-relevance.json (L1)"]}

reading-pipeline — 5-Layer Book Distillation Skill

This skill turns reading into a compounding asset. Books, long PDFs, and research papers go in; structured Markdown knowledge in a configurable vault comes out, in 5 layers (L0 → L4).

For full project context, see the README in the skill's repo. For execution, follow this Operating Contract and the references/ manuals.

What this skill does

Layer	Output	Location
L0 — Raw Extract	txt + headings + index.json	${SCRATCH_PATH}/<project>/
L1 — Question Match	relevance.json (RQ-driven gate)	${SCRATCH_PATH}/<project>/
L2 — Single-Book Distillation	9-section reading-note	${VAULT_PATH}/${PATHS.L2_READING_NOTES}/<date>-<slug>-L2.md
L3 — Concept Aggregation	wiki-concept with mandatory Convergence/Divergence/Synthesis	${VAULT_PATH}/${PATHS.L3_CONCEPTS}/<concept>.md
L3.5 — Cross-Book Synthesis	topic-map with Authority Matrix + Divergences	${VAULT_PATH}/${PATHS.L3_5_CROSS_BOOK}/<topic>-cross-book-synthesis.md
L4 — Method / Skill	Codex skill body + Obsidian pointer card	${CODEX_SKILLS_PATH}/<slug>/ + ${VAULT_PATH}/${PATHS.L4_SKILL_POINTERS}/<slug>.md

What this skill does NOT do

• Not a casual summarizer (use ChatGPT for that)
• Not a book downloader (delegate to ebook-finder or user-provided files)
• Not a PDF extractor by itself (delegate to docling or pandoc — see references/skill-bridges.md)
• Not an auto-publisher (vault is internal; publication is downstream)
• Not for casual "read this and summarize" — every output must promote to L3/L4 or archive_only with reason

Configuration

Read ${SKILL_DIR}/config.yaml (or config.example.yaml for the template) for personalized paths and research questions. All ${VAULT_PATH} / ${SCRATCH_PATH} / ${PATHS.*} references in this skill resolve from config.yaml.

If config.yaml is missing, refuse to proceed and ask the user to create one from config.example.yaml.

Operating Contract (10 hard rules)

1. Read the schema first. Open schema/reading-pipeline-schema.md (in skill directory) before any non-trivial decision. The schema defines field names, section requirements, lint gates, and promotion rules. Do not improvise these.

2. Classify the request. Use references/00-pipeline-overview.md §2 Request Triage. Different entry points: new-book ingest / cluster-merge / quarterly re-distillation / single-concept revision.

3. Always run the L1 RQ-match gate. Even if user says "just read it," confirm at least one research question (from config.yaml + ${VAULT_PATH}/${PATHS.RESEARCH_QUESTIONS}/) is matched, or get explicit --force-full override. Unfocused reading is the most common failure mode.

4. Resolve citations. No L2 reading-note ships with citations_resolved: true unless every Reusable Framework in §4 has a row in §5 with a (source: §section / heading-anchor) reference. Otherwise set citations_pending_l0: true.

5. Fill Differential Value. Before saving L2, list already-read books in the same cluster and write the head-to-head comparison. If first in cluster: write "baseline" + frameworks setting the bar. Abstract praise ("classic", "comprehensive", "insightful") is forbidden.

6. Grep before creating L3. Search concept: and aliases: fields across ${VAULT_PATH}/${PATHS.L3_CONCEPTS}/ before creating any new wiki-concept. If a synonym matches, merge_into_concept — never fork. Be aggressive with aliases (include Chinese + English variants).

7. Forbid empty Synthesis at status:active. L3 pages without user judgment are noise. Either get the user's synthesis (or your best draft pending review with status: draft), or merge_into_concept an existing page, or do not create.

8. Pointer card is part of L4. Creating a Codex skill body without ${VAULT_PATH}/${PATHS.L4_SKILL_POINTERS}/<slug>.md is incomplete. Both must exist in the same turn. The pointer card body is ≤ 150 lines and does NOT copy SKILL.md content.

9. Use the 5-tag merge taxonomy when merging new books into existing concepts: SUPPORTS / REFINES / CONTRADICTS / NEW (sub-aspect) / NEW (concept). Tag every contribution explicitly. CONTRADICTS triggers user-review flag, never silent Synthesis overwrite.

10. Quarterly re-distillation is not optional. When triggered (90 days default), regenerate Synthesis for any L3 with sources ≥ 3, and update L3.5 Authority Matrix. Skipping = compounding drift. Append entry to ${VAULT_PATH}/${PATHS.CHANGE_LOG}.

Default Output

Unless the user specifies otherwise, when asked to ingest a new book the skill produces, in order:

1. L0 extraction artifacts (txt + headings.md + index.json) in ${SCRATCH_PATH}/<project>/
2. L1 relevance.json with RQ matches and recommended_depth
3. L2 reading-note in ${VAULT_PATH}/${PATHS.L2_READING_NOTES}/<date>-<slug>-L2.md, using templates/L2-single-book-reading-note.md
4. L3 wiki-concept pages (created or updated) per the Distillation Recommendation
5. L3.5 topic synthesis if the book belongs to an existing or newly-formed cluster
6. L4 skill update or new skill if frameworks cross the threshold defined in §References below
7. Updates to ${VAULT_PATH}/${PATHS.READING_INDEX} and ${VAULT_PATH}/${PATHS.ROUTING_INDEX}
8. End-of-run summary listing every file created or modified, with quality-gate status

Pipeline Entry Points

Trigger	Entry	Primary reference
New book to ingest	references/00-pipeline-overview.md §1	references/10-l0-extraction.md
Additional book in existing cluster	references/70-new-book-merger.md	merger protocol
Quarterly re-distillation	references/80-quality-gates.md §quarterly	re-distillation routine
Audit existing L2/L3 quality	references/80-quality-gates.md §lint	lint checklists
Create or upgrade an L4 skill from concepts	references/60-l4-skill-distillation.md	skill creation flow
Look up exact prompts to use	references/90-prompt-templates.md	concrete LLM prompts per layer
See what good output looks like	references/95-case-studies.md	3 worked clusters as gold standard
Verify skill behavior	references/self-test.md	smoke + behavior + failure mode tests
Diagnose an issue	references/known-issues.md	common pitfalls + fixes
Coordinate with other skills	references/skill-bridges.md	docling, book-collector, lark-doc, etc.
Find templates / schemas	references/source-templates-index.md	canonical paths

References

Open the relevant reference in full when executing that stage. Do not paraphrase — these references are precise enough that paraphrasing introduces drift.

Layer specs

• references/00-pipeline-overview.md — 5-layer flow, request triage, end-of-run summary template
• references/10-l0-extraction.md — epub/pdf extraction, headings parsing, index.json contract
• references/20-l1-question-match.md — RQ match algorithm, depth-decision rules, skip criteria
• references/30-l2-single-book.md — L2 9-section structure, citation resolution, differential value rules
• references/40-l3-concept-aggregation.md — wiki-concept creation, uniqueness grep, 5-tag merge taxonomy
• references/50-l3-5-cross-book-synthesis.md — Authority Matrix, Divergences discipline, 12 mandatory sections
• references/60-l4-skill-distillation.md — Codex skill body + pointer card contract
• references/70-new-book-merger.md — incremental updates, tag propagation
• references/80-quality-gates.md — per-layer lint, quarterly re-distillation

Operational manuals

• references/90-prompt-templates.md — concrete LLM prompts per layer (drop-in)
• references/95-case-studies.md — 3 fully worked clusters (strategy / thinking method / quant) as gold standard
• references/self-test.md — verify skill behavior; smoke + behavior + failure tests
• references/known-issues.md — common pitfalls (entity pollution, empty Synthesis, etc.) + fixes
• references/skill-bridges.md — cooperation with docling / book-collector / ebook-finder / lark-doc / pdf

Reference data

• references/source-templates-index.md — canonical paths to all templates and schemas
• schema/reading-pipeline-schema.md — authoritative 5-layer specification (the constitution)
• schema/knowledge-classification-schema.md — folder taxonomy, canonical types, canonical domains

Quality Rules (hard constraints — see references/80-quality-gates.md for full lint)

• Do not write durable concept content to ${PATHS.L2_READING_NOTES} (raw is for source captures, not concepts)
• Do not write skill bodies into ${PATHS.L4_SKILL_POINTERS} (only pointer cards live in vault; bodies live in ${CODEX_SKILLS_PATH})
• Do not create wiki-concept pages whose Synthesis section is empty AND status: active
• Do not create L2 reading-notes with citations_resolved: true if §5 Citations is empty or placeholder
• Do not allow concepts_to_promote to contain person names, tool names, product names, or any non-abstract terms
• Do not silently flatten conflicts in cross-book synthesis — every divergence between sources gets its own row
• Do not skip writing the pointer card when creating a new Codex skill — both files must land in the same turn
• Do not run a quarterly re-distillation without appending to ${VAULT_PATH}/${PATHS.CHANGE_LOG}
• Do not invent values for the domain: frontmatter field — must be one of canonical_domains in config.yaml
• Do not write outside the paths declared in config.yaml.paths and ${SCRATCH_PATH}

Self-Check Before Final

Before declaring the pipeline complete for a given book or topic, verify:

• L2 reading-note exists, all 9 sections filled, lint passes (references/80-quality-gates.md §L2)
• Every concepts_to_promote entry has been resolved (created or merged)
• If a new L4 skill was created: both Codex body and Obsidian pointer card exist
• If the book belongs to an L3.5 cluster: cluster's Authority Matrix and Integration History updated
• ${VAULT_PATH}/${PATHS.READING_INDEX} lists the new L2 entry
• End-of-run summary lists every file touched and any open question requiring user judgment

See references/self-test.md for the full verification suite.

Locale awareness

Per config.yaml.locale:

• Concept naming: prefer the source's originating language when distinct (e.g. Evidence Matrix, not 证据矩阵, since the framework originated in English-language management literature)
• Aliases: always populate both Chinese and English variants when applicable — every alias miss is a future fork
• Operating Contract, this SKILL.md, and references are written in English by default for broader collaboration; the user's vault content can be in any language