Planning-centric workflow for substantial work across software, analyses, artifacts, documentation, and configuration. Invoke manually with $work-cycle when alignment matters; not for straightforward one- or two-edit requests.
Create or update developer-facing and agent-facing project documentation, or run module-scoped codebase audits. Invoke manually with $documentation for codebase maps, module documentation, codebase review/audit workflows, and README.md or AGENTS.md work.
Documentation subskill for project hygiene maintenance. Use through $documentation when the user asks to maintain, clean up, health-check, refresh AGENTS.md/notebook/TODOs, inspect git branches/PRs/stashes, or review overall project state. Do not use for codebase audit, codebase review, release-check, or module-scoped bug-finding requests; those belong to module-codebase-review.
Manual-only workflow for codebase audit, codebase review, release-check, paper-freeze-check, and module-scoped multi-agent read-only bug/code-smell audits that produce a prioritized notebook report and TODO-ready findings. Use this instead of maintain-project for requests that ask to audit or review code behavior.
Ergonomic notebook-backed TODO capture for deferred work. Invoke manually with /defer when the user asks to defer, save, park, or add a TODO for later work while preserving the current conversation context.
Initialize a project workspace for Claude Code with project instructions, repository checks, notebook scaffolding, optional remotes, and optional O2/SLURM setup. Invoke manually with /init-project for first-time project setup, notebook bootstrap, project remotes, or O2/SLURM setup.
Ergonomic notebook-backed TODO capture for deferred work. Invoke manually with $defer when the user asks to defer, save, park, or add a TODO for later work while preserving the current conversation context.
Initialize a project workspace for Codex with project instructions, repository checks, notebook scaffolding, optional remotes, and optional O2/SLURM setup. Invoke manually with $init-project for first-time project setup, notebook bootstrap, project remotes, or O2/SLURM setup.