name	apt-visualize
description	Create a 3D scatter plot visualization of atom probe data. Use when the user wants to see a 3D view, atom map, or point cloud of their APT data.
argument-hint	[ions to show]

Create a 3D scatter plot of the atom probe data. Use the MATLAB MCP server.

The MATLAB workspace must contain:

If pos has an ion column (ranges have been allocated):

scatterPlotPosWidget(pos, colorScheme);

This opens an interactive widget where the user can toggle ion visibility, rotate, zoom, and adjust transparency.

If pos does NOT have an ion column yet (no ranges allocated), use the basic scatter plot:

scatterPlotPosData(pos, colorScheme);

Tell the user:

The 3D scatter plot is displayed in a MATLAB figure window
They can interact with it directly in MATLAB (rotate, zoom, toggle ions)
This is a GUI-based tool — interaction happens in MATLAB, not through Claude
If they want to filter to specific ions, they can use the widget controls in the MATLAB figure

name	apt-visualize
description	Create a 3D scatter plot visualization of atom probe data. Use when the user wants to see a 3D view, atom map, or point cloud of their APT data.
argument-hint	[ions to show]