llm-wiki-builder

name	llm-wiki-builder
description	Codex workflow skill for building Foam-compatible LLM wikis from Zotero, PubMed, documents, and local Markdown notes.

LLM Wiki Builder

Use this skill when working on Foam, LLM wiki, literature wiki, citation-ready notes, or Markdown knowledge graph tasks in this repository or an installed workspace.

Read First

• .clinerules/35-foam-llm-wiki.md
• .clinerules/workflows/llm-wiki-build.md
• .github/zotero-research-workflow.md when Zotero or PubMed evidence is involved

Workflow

1. Find the wiki root and existing Foam conventions.
2. Build a note map before editing files.
3. Gather evidence through the appropriate MCP tools:
   • Zotero Keeper for saved library state and imports.
   • PubMed Search MCP for search, details, related/citing/reference traversal, export, timeline, and full-text follow-up.
   • Asset-aware/document tools for PDFs, DOCX, DFM, tables, figures, and span-level evidence when available.
4. Write Markdown notes with stable filenames, one H1, clean sections, and Foam-compatible wikilinks.
5. Validate links, attachments, and source markers before reporting completion.

Guardrails

• Ask before bulk rewrites, destructive cleanup, or Zotero imports.
• Keep source identifiers near claims.
• Do not leave unresolved wikilinks unless they are marked as intentional TODOs.
• Keep generated notes human-readable and chunkable for LLM retrieval.