kaivu-agent-ts

Frame or revise literature-review questions before review work. Use for broad or ambiguous review requests; questions about how to improve, evaluate, compare, debug, or explain limitations of a method, system, benchmark, dataset, or research direction when the answer should be grounded in related work rather than immediate implementation or advice; and follow-up corrections to an existing frame.

Plan and run literature review discovery work. Use when Codex needs to generate or validate literature search queries, coordinate literature search, build a ranked paper shortlist, or prepare selected papers for paper-digest, paper-ingest-batch, or paper wiki work. Use problem-frame first when the research objective is broad, ambiguous, or underspecified.

Search external literature and paper candidates with the project's rag_arxiv_retrieve tool. Use when Codex needs to find papers, run literature search, search arXiv-like literature, retrieve candidate papers from a query or problem frame, rank a shortlist, or prepare selected papers for paper-digest, literature-review, or paper-ingest-batch. This is external literature search, not paper-wiki-search.

Top-level guide for the paper literature wiki system. Use when Codex needs to route between literature review discovery, paper digest, paper ingest, batch ingest, wiki search, wiki query, lint, or save-like knowledge filing; reason about raw paper assets versus generated wiki pages; prepare or validate the installed Codex paper skill set; or modify the overall paper wiki workflow.

Create or revise structured PaperDigest records from scientific papers, PDFs, PDF URLs, extracted paper text, abstracts, or paper metadata. Use when Codex needs to turn one paper into a reusable digest asset for literature review, paper ingest, wiki filing, citation-backed synthesis, or batch paper processing.

Orchestrate batch paper ingestion for the persistent paper literature wiki. Use when Codex receives multiple papers, PDF URLs, PDF files, abstracts, or paper metadata records that need deduplication, parallel per-paper digest/ingest work, cross-reference, commit, and a literature-review style batch summary.

Plan and materialize one structured PaperDigest into a persistent literature wiki. Use when Codex needs to ingest a single digested paper into wiki pages, choose whether to create or update page kinds, use existing wiki retrieval hints, maintain cross-references, or revise single-paper ingest behavior.

Health-check the persistent paper literature wiki. Use when Codex needs to lint the wiki, audit the paper wiki, clean up wiki health, find orphan pages, find dangling wikilinks, find stale claims, find missing evidence, find missing cross-references, find duplicate titles, find missing page candidates, or revise LiteratureLint behavior.

Answer questions using the persistent paper literature wiki. Use when Codex needs to query the paper wiki, answer based on the wiki, explain what the wiki knows, summarize a topic, compare papers or claims, retrieve wiki pages, synthesize an answer with page citations, decide whether an answer is worth filing, or revise WikiQuery behavior.

Retrieve relevant pages from the persistent paper literature wiki. Use when Codex needs to build a reading set, inspect wiki context before ingest planning, find existing pages before creating new ones, expand linked pages, search the paper wiki, find in wiki, locate claims/topics/methods/benchmarks/findings, or revise WikiRetrieve behavior.

Produce a concise, structured scientific problem frame from a user request. Use when an agent needs to clarify the research objective, narrow scope, surface ambiguities, extract key variables and constraints, and define evidence-based success criteria before literature review, hypothesis generation, or experiment planning.