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Synthesis - Aggregate results into comprehensive report
Usage Examples
/oh-my-claudecode:sciomc <goal> # Standard research with user checkpoints
/oh-my-claudecode:sciomc AUTO: <goal> # Fully autonomous until complete
/oh-my-claudecode:sciomc status # Check current research session status
/oh-my-claudecode:sciomc resume # Resume interrupted research session
/oh-my-claudecode:sciomc list # List all research sessions
/oh-my-claudecode:sciomc report <session-id> # Generate report for session
Quick Examples
/oh-my-claudecode:sciomc What are the performance characteristics of different sorting algorithms?
/oh-my-claudecode:sciomc AUTO: Analyze authentication patterns in this codebase
/oh-my-claudecode:sciomc How does the error handling work across the API layer?
Research Protocol
Stage Decomposition Pattern
When given a research goal, decompose into 3-7 independent stages:
## Research Decomposition**Goal:**<originalresearchgoal>### Stage 1: <stage-name>-**Focus:** What this stage investigates
-**Hypothesis:** Expected finding (if applicable)
-**Scope:** Files/areas to examine
-**Tier:** LOW | MEDIUM | HIGH
### Stage 2: <stage-name>
...
Parallel Scientist Invocation
Fire independent stages in parallel via Task tool:
"Explain why race conditions occur in the cache layer"
"Compare approaches A vs B"
HIGH
"Compare Redux vs Context for state management here"
Verification Loop
After parallel execution completes, verify findings:
// Cross-validation stage
Task(subagent_type="oh-my-claudecode:scientist", model="sonnet", prompt="
[RESEARCH_VERIFICATION]
Cross-validate these findings for consistency:
Stage 1 findings: <summary>
Stage 2 findings: <summary>
Stage 3 findings: <summary>
Check for:
1. Contradictions between stages
2. Missing connections
3. Gaps in coverage
4. Evidence quality
Output: [VERIFIED] or [CONFLICTS:<list>]
")
AUTO Mode
AUTO mode runs the complete research workflow autonomously with loop control.
Loop Control Protocol
[RESEARCH + AUTO - ITERATION {{ITERATION}}/{{MAX}}]
Your previous attempt did not output the completion promise. Continue working.
Current state: {{STATE}}
Completed stages: {{COMPLETED_STAGES}}
Pending stages: {{PENDING_STAGES}}
Promise Tags
Tag
Meaning
When to Use
[PROMISE:RESEARCH_COMPLETE]
Research finished successfully
All stages done, verified, report generated
[PROMISE:RESEARCH_BLOCKED]
Cannot proceed
Missing data, access issues, circular dependency
AUTO Mode Rules
Max Iterations: 10 (configurable)
Continue until: Promise tag emitted OR max iterations
State tracking: Persist after each stage completion
Cancellation:/oh-my-claudecode:cancel or "stop", "cancel"
// All fire simultaneously
Task(subagent_type="oh-my-claudecode:scientist", model="haiku", prompt="[STAGE:1] Analyze src/api/...")
Task(subagent_type="oh-my-claudecode:scientist", model="haiku", prompt="[STAGE:2] Analyze src/utils/...")
Task(subagent_type="oh-my-claudecode:scientist", model="haiku", prompt="[STAGE:3] Analyze src/components/...")
Hypothesis Battery (Parallel)
When testing multiple hypotheses:
// Test hypotheses simultaneously
Task(subagent_type="oh-my-claudecode:scientist", model="sonnet", prompt="[HYPOTHESIS:A] Test if caching improves...")
Task(subagent_type="oh-my-claudecode:scientist", model="sonnet", prompt="[HYPOTHESIS:B] Test if batching reduces...")
Task(subagent_type="oh-my-claudecode:scientist", model="sonnet", prompt="[HYPOTHESIS:C] Test if lazy loading helps...")
Cross-Validation (Sequential)
When verification depends on all findings:
// Wait for all parallel stages
[stages complete]
// Then sequential verification
Task(subagent_type="oh-my-claudecode:scientist", model="opus", prompt="
[CROSS_VALIDATION]
Validate consistency across all findings:
- Finding 1: ...
- Finding 2: ...
- Finding 3: ...
")
Concurrency Limit
Maximum 20 concurrent scientist agents to prevent resource exhaustion.
### Quality Validation
Findings must meet quality threshold:
| Quality Check | Requirement |
|---------------|-------------|
| Evidence present | At least 1 [EVIDENCE] per [FINDING] |
| Confidence stated | Each finding has [CONFIDENCE] |
| Source cited | File paths are absolute and valid |
| Reproducible | Another agent could verify |
## Report Generation
### Report Template
```markdown
# Research Report: {{GOAL}}
**Session ID:** {{SESSION_ID}}
**Date:** {{DATE}}
**Status:** {{STATUS}}
## Executive Summary
{{2-3 paragraph summary of key findings}}
## Methodology
### Research Stages
| Stage | Focus | Tier | Status |
|-------|-------|------|--------|
{{STAGES_TABLE}}
### Approach
{{Description of decomposition rationale and execution strategy}}
## Key Findings
### Finding 1: {{TITLE}}
**Confidence:** {{HIGH|MEDIUM|LOW}}
{{Detailed finding with evidence}}
#### Evidence
{{Embedded evidence blocks}}
### Finding 2: {{TITLE}}
...
## Visualizations
{{FIGURES}}
## Cross-Validation Results
{{Verification summary, any conflicts resolved}}
## Limitations
- {{Limitation 1}}
- {{Limitation 2}}
- {{Areas not covered and why}}
## Recommendations
1. {{Actionable recommendation}}
2. {{Actionable recommendation}}
## Appendix
### Raw Data
{{Links to raw findings files}}
### Session State
{{Link to state.json}}
Figure Embedding Protocol
Scientists generate visualizations using this marker:
[FIGURE:path/to/figure.png]
Caption: Description of what the figure shows
Alt: Accessibility description
[/FIGURE]
Report generator embeds figures:
## Visualizations
*Caption: Description of what the figure shows*
*Caption: Description of what the figure shows*
