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Human Cell Atlas data portal. Use for accessing single-cell reference datasets, cell type markers, and standard atlases.
Instalar con Codex o Claude Copia este prompt, pégalo en Codex, Claude u otro asistente, y deja que revise la página de la skill y la instale por ti.
Basado en la clasificación ocupacional SOC
| name | human-cell-atlas |
| domain | compbio |
| description | Human Cell Atlas data portal. Use for accessing single-cell reference datasets, cell type markers, and standard atlases. |
| license | MIT license |
| metadata | {"skill-author":"Eric Yiru"} |
The Human Cell Atlas (HCA) is a global effort to create a comprehensive reference map of all human cells. The HCA data portal provides access to thousands of single-cell datasets spanning multiple tissues, cell types, and conditions.
This skill should be used when:
# Using cellxgene-census (for HCA data)
import cellxgene_census
# Get census
census = cellxgene_census.open_soma()
# Query specific tissue
adata = cellxgene_census.get_anndata(
census,
organism="Homo sapiens",
tissue="lung"
)
# Map your data to HCA references
# Use Seurat or scanpy integration
# Find markers for cell types
# Query HCA for specific cell types
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