kdense-pyopenms

Complete mass spectrometry analysis platform. Use for proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free and isobaric quantification, adduct/accurate-mass annotation, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. For simple spectral comparison and small-molecule library matching use matchms.

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Repositorio: eightmm/codex-science
Última actividad en el origen: 10 de julio de 2026 a las 05:18
Idioma detectado de SKILL.md: inglés
Estrellas: 2
Forks: 0

Opciones de instalación

De forma predeterminada está seleccionado el prompt que primero revisa el origen. Puedes cambiar a un comando directo o descargar una copia local.

Instalar con Codex o Claude Copia este prompt, pégalo en Codex, Claude u otro asistente, y deja que revise la página de la skill y la instale por ti.

Un comando directo omite el prompt de revisión. Revisa el origen antes de ejecutarlo.

npx skills add https://github.com/eightmm/codex-science --skill kdense-pyopenms

El comando permanece en una sola línea. Desplázate horizontalmente para revisarlo antes de copiarlo.

¿Prefieres una copia local? Descarga los archivos que SkillsMP tiene disponibles ahora.

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Lee SKILL.md y los archivos complementarios que muestra SkillsMP antes de decidir si quieres instalarlo.

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2 archivos

SKILL.md

Instrucciones de origen · Vista previa de solo lectura

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quantitative-research

Execute auditable quantitative research across preregistered study design, statistical inference, numerical verification, dimensional analysis, uncertainty propagation, counterexample search, and formal proof. Use when a scientific or mathematical question needs actual computation and machine-readable evidence rather than only explanation.

2026-08-04

statistical-decision-analysis

Compare finite actions under uncertainty with explicit states, loss, utility or risk-neutral payoff, priors, experiment likelihoods, and a declared decision criterion. Use for Bayes risk, expected utility or payoff, pure-action minimax, minimax regret, dominance, posterior decision policies, EVPI/EVSI, experiment-cost decisions, and prior-threshold sensitivity; do not use for ordinary statistical testing, causal identification, strategic games, or MDP/POMDP/RL planning.

2026-08-04

cx-statistical-decision-analysis

2026-08-04

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Kdense Pyopenms

Use this Codex adapter for the pinned upstream scientific skill.

Catalog status

Status: inactive

Source: kdense

Audit reasons: executable-content

Upstream license: 3 clause BSD license

Inventory: ../../inventory.json

Upstream instructions: ../../../vendor/scientific-agent-skills/skills/pyopenms/SKILL.md

Procedure

Resolve the plugin root as three directories above this skill directory.

Read the matching inventory record and verify its status, reasons, source path, and pinned revision.

Do not read the upstream instructions until the user has seen every audit reason and given explicit acknowledgement. Acknowledgement permits instruction inspection only.

Treat upstream frontmatter as source metadata, not as Codex configuration. Follow the instruction body only where it is compatible with available Codex tools and the current user-approved plan.

Treat tools named for another agent runtime as capability requests. Map them to an available Codex tool only when the behavior is equivalent; otherwise report the unavailable capability.

Ask before credentials, package installation, new network hosts, remote compute, writes, paid services, destructive actions, or imported executable code.

Use $science-provenance for produced scientific outputs and $science-review before presenting scientific claims.

Boundaries

This wrapper does not grant credentials, network access, package installation, or script execution.

Do not change an inactive record to active from inside a research task.

Preserve failures, uncertainty, source identifiers, and licensing constraints.

name	kdense-pyopenms
description	Complete mass spectrometry analysis platform. Use for proteomics and metabolomics workflows—feature detection, peptide/protein identification, label-free and isobaric quantification, adduct/accurate-mass annotation, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. For simple spectral comparison and small-molecule library matching use matchms.

Kdense Pyopenms

Use this Codex adapter for the pinned upstream scientific skill.

Catalog status

Status: inactive
Source: kdense
Audit reasons: executable-content
Upstream license: 3 clause BSD license
Inventory: ../../inventory.json
Upstream instructions: ../../../vendor/scientific-agent-skills/skills/pyopenms/SKILL.md

Procedure

Resolve the plugin root as three directories above this skill directory.
Read the matching inventory record and verify its status, reasons, source path, and pinned revision.
Do not read the upstream instructions until the user has seen every audit reason and given explicit acknowledgement. Acknowledgement permits instruction inspection only.
Treat upstream frontmatter as source metadata, not as Codex configuration. Follow the instruction body only where it is compatible with available Codex tools and the current user-approved plan.
Treat tools named for another agent runtime as capability requests. Map them to an available Codex tool only when the behavior is equivalent; otherwise report the unavailable capability.
Ask before credentials, package installation, new network hosts, remote compute, writes, paid services, destructive actions, or imported executable code.
Use $science-provenance for produced scientific outputs and $science-review before presenting scientific claims.

Boundaries

This wrapper does not grant credentials, network access, package installation, or script execution.
Do not change an inactive record to active from inside a research task.
Preserve failures, uncertainty, source identifiers, and licensing constraints.

kdense-pyopenms

Datos de origen

Opciones de instalación

Revisa los archivos de origen

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Más de este repositorio

Kdense Pyopenms

Catalog status

Procedure

Boundaries

Kdense Pyopenms

Catalog status

Procedure

Boundaries