| name | molclaw-protein-structure-retrieve |
| description | Retrieve and download a protein structure file (.pdb or .cif) using a gene name, UniProt ID, or PDB ID. |
| license | MIT license |
| metadata | {"skill-author":"PJLab"} |
Retrieve Protein Structure
Note:
- Local files are not directly accessible by the server. Please upload them to the server using
molclaw-file-transfer before execution.
- For PDB file inputs, it is recommended to preprocess them using
molclaw-pdbfixer before execution.
- Please refer to skill
molclaw-scp-server to complete tool invocation.
Scene 1: If the gene name is provided, please use tool retrieve_protein_structure_by_gene_name.
The description of tool retrieve_protein_structure_by_gene_name.
Retrieve and download a protein structure (.pdb or .cif) using a standard gene name.
Args:
gene_name (str): Input gene name (e.g., 'TP53')
organism (str): Required species NCBI Taxonomy ID (use 9606 for human or 10090 for mouse)
sort_by (str): Required sorting strategy: 'length' prioritizes sequence coverage; 'resolution' prioritizes structural resolution.
Return:
status (str): success/error
msg (str): message
prot_structure_path (str): Path to the downloaded .pdb or .cif structure file
How to use tool retrieve_protein_structure_by_gene_name :
