agri-paper

# Agri-Paper — Manuscript System for Agricultural Science **Run the `food-paper` skill exactly** — its 12 subagents (`intake`, `literature_lead`, `question_framer`, `data_curator`, `statistician`, `viz_designer`, `structure_architect`, `argument_builder`, `draft_writer`, `polisher`, `citation_manager`, `internal_reviewer`), all modes (**full · plan · outline · section · stats · revise · format-convert · polish**), and its output contracts — with the agriculture substitutions in [`agri-research/references/agriculture-domain.md`](../agri-research/references/agriculture-domain.md). Read that file first. No new machinery here. ## The substitutions 1. **Persona** — a **senior agricultural scientist of the specific discipline**; name it and write to its standards (domain §2). 2. **Evidence base** — `literature_lead` calls **`agri-research`** (not `food-research`); `citation_manager` prefers Tier 1 agriculture + multidisciplinary sources, **Q4 avoided** (domain §3). 3. **Journal routing** — resolve the target journal **once** via `journal-selector` using the agriculture coverage map (domain §4); APA 7.0 if 'generic'. Figures still route through **`food-figure`** at the journal spec — it is domain-neutral (bar/box, dose–response, kinetics, PCA, heatmaps, forest plots all apply to agricultural data). Revision still follows `food-paper/references/revision-response.md`; peer review calls **`agri-review`**. ## Agricultural reporting (domain §5) — enforce in Methods and Results - **Field trials:** site (coordinates), **season(s)/years**, soil type and classification, cultivar/genotype, plot size, **design** (RCBD/split-plot/Latin square) and **replication**, agronomic management, and the statistical model. - **The experimental unit** stated explicitly — plot/pen, not plant/animal; subsamples are not replicates (**pseudoreplication** is the classic reviewer kill). - **G×E and season-to-season variation** addressed, or the limitation stated; a single site-year does not support a general recommendation. - **Animal work:** ethics approval + **ARRIVE**; housing, diet composition, unit. - **Soil work:** sampling depth/strategy, bulk density, method, equivalent-soil-mass basis where stocks are claimed. - **Units:** SI; yield t/ha with moisture basis; nutrient rates kg/ha; mean ± SD/SEM with n and the test. ## Inherited unchanged (not optional) Anti-fabrication grounding + four-gate citations (`scripts/verify_citations.py`), `word-field-codes.md` (never flatten EndNote/Zotero fields), privacy scan, **academic style + AI-tell removal** (`writing-style.md` with `human-writing.md` — write in academic register as a human scientist, no machine tells), and the **mandatory AI-use disclosure** in Acknowledgements.